STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_3058KEGG: dvl:Dvul_0694 hypothetical protein; IMG reference gene:2503008785; PFAM: Uncharacterized conserved protein (DUF2156). (293 aa)    
Predicted Functional Partners:
Dalk_3057
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dol:Dole_2064 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; IMG reference gene:2503008784; PFAM: 4Fe-4S binding domain.
       0.465
Dalk_4306
PFAM: protein of unknown function UPF0153; KEGG: dol:Dole_0105 hypothetical protein; IMG reference gene:2503010054; PFAM: Uncharacterised protein family (UPF0153).
  
     0.421
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.