STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_3081KEGG: noc:Noc_2819 hypothetical protein; IMG reference gene:2503008810. (222 aa)    
Predicted Functional Partners:
Dalk_3078
TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein; KEGG: dol:Dole_2154 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; IMG reference gene:2503008807; PFAM: Histidine biosynthesis protein; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase.
       0.413
Dalk_3079
KEGG: sat:SYN_00762 hypothetical protein; IMG reference gene:2503008808.
       0.413
Dalk_3080
PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: lfe:LAF_0758 imidazoleglycerol-phosphate dehydratase; IMG reference gene:2503008809; PFAM: Imidazoleglycerol-phosphate dehydratase.
       0.413
Dalk_3082
PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: sfu:Sfum_0527 protein of unknown function DUF955; IMG reference gene:2503008811; PFAM: Helix-turn-helix; Domain of unknown function (DUF955).
       0.410
Dalk_3083
KEGG: sfu:Sfum_0528 hypothetical protein; IMG reference gene:2503008812.
       0.410
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.