STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_3139TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: pca:Pcar_2210 predicted S-adenosylmethionine-dependent methyltransferase; IMG reference gene:2503008868; PFAM: MraW methylase family; TIGRFAM: S-adenosyl-methyltransferase MraW. (326 aa)    
Predicted Functional Partners:
Dalk_3140
TIGRFAM: MraZ protein; PFAM: protein of unknown function UPF0040; KEGG: dol:Dole_2796 MraZ protein; IMG reference gene:2503008869; PFAM: MraZ protein; TIGRFAM: mraZ protein.
  
 0.995
Dalk_3137
Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: dol:Dole_2793 peptidoglycan glycosyltransferase; IMG reference gene:2503008866; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain.
  
 0.955
Dalk_4649
PFAM: ribosomal protein S16; KEGG: lme:LEUM_1485 SSU ribosomal protein S16P; IMG reference gene:2503010405; PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16.
  
 
 0.923
Dalk_2691
PFAM: ribosomal protein S9; KEGG: pca:Pcar_1899 30S ribosomal protein S9; IMG reference gene:2503008414; PFAM: Ribosomal protein S9/S16.
   
 
 0.922
Dalk_2346
PFAM: beta-lactamase domain protein; Rhodanese domain protein; KEGG: sus:Acid_7272 beta-lactamase domain-containing protein; IMG reference gene:2503008066; PFAM: Metallo-beta-lactamase superfamily; Rhodanese-like domain.
   
   0.917
Dalk_0919
PFAM: ribosomal protein S6; KEGG: dol:Dole_0010 ribosomal protein S6; IMG reference gene:2503006620; PFAM: Ribosomal protein S6; TIGRFAM: ribosomal protein S6.
    
 
 0.915
Dalk_3136
TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: dol:Dole_2792 UDP-N-acetylmuramyl-tripeptide synthetase; IMG reference gene:2503008865; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase family, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase.
  
 0.906
Dalk_1916
PFAM: ribosomal protein S10; KEGG: dol:Dole_0707 ribosomal protein S10; IMG reference gene:2503007628; PFAM: Ribosomal protein S10p/S20e; TIGRFAM: ribosomal protein S10, bacterial/organelle.
 
 
 0.881
Dalk_3135
TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: dol:Dole_2791 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase; IMG reference gene:2503008864; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase family, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase.
 
  
 0.860
Dalk_1898
TIGRFAM: ribosomal protein S5; PFAM: ribosomal protein S5 domain protein; Ribosomal protein S5; KEGG: dol:Dole_0725 ribosomal protein S5; IMG reference gene:2503007610; PFAM: Ribosomal protein S5, N-terminal domain; Ribosomal protein S5, C-terminal domain; TIGRFAM: ribosomal protein S5, bacterial/organelle type.
    
 
 0.859
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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