Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Dalk_3192PFAM: short-chain dehydrogenase/reductase SDR; MaoC domain protein dehydratase; Sterol-binding domain protein; KR domain protein; KEGG: dol:Dole_1549 short-chain dehydrogenase/reductase SDR; IMG reference gene:2503008921; PFAM: MaoC like domain; short chain dehydrogenase; SCP-2 sterol transfer family. (703 aa)    
Predicted Functional Partners:
Dalk_3191
PFAM: short-chain dehydrogenase/reductase SDR; protein of unknown function DUF35; Sterol-binding domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KR domain protein; KEGG: dol:Dole_1550 short-chain dehydrogenase/reductase SDR; IMG reference gene:2503008920; PFAM: Rubredoxin-like zinc ribbon domain (DUF35_N); 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; DUF35 OB-fold domain; short chain dehydrogenase; SCP-2 sterol transfer family.
 
0.992
Dalk_1056
TIGRFAM: polyketide-type polyunsaturated fatty acid synthase PfaA; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: ava:Ava_2590 beta-ketoacyl synthase; IMG reference gene:2503006757; PFAM: Acyl transferase domain; Phosphopantetheine attachment site; KR domain; Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: polyketide-type polyunsaturated fatty acid synthase PfaA.
  
 0.990
Dalk_3911
PFAM: protein of unknown function DUF35; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: dol:Dole_1550 short-chain dehydrogenase/reductase SDR; IMG reference gene:2503009655; PFAM: Rubredoxin-like zinc ribbon domain (DUF35_N); 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal.
 0.982
Dalk_3190
KEGG: dol:Dole_1551 acetyl-CoA acetyltransferase; IMG reference gene:2503008919; PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain.
 
 0.966
Dalk_3659
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: dol:Dole_0155 3-hydroxyacyl-CoA dehydrogenase NAD-binding; IMG reference gene:2503009403; PFAM: Enoyl-CoA hydratase/isomerase family; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain.
  
 0.956
Dalk_4049
PFAM: protein of unknown function DUF35; KEGG: afu:AF0965 hypothetical protein; IMG reference gene:2503009794; PFAM: Rubredoxin-like zinc ribbon domain (DUF35_N); DUF35 OB-fold domain.
 
 0.952
Dalk_3343
PFAM: protein of unknown function DUF35; KEGG: afu:AF0966 hypothetical protein; IMG reference gene:2503009073; PFAM: Rubredoxin-like zinc ribbon domain (DUF35_N); DUF35 OB-fold domain.
 
 0.945
Dalk_3342
PFAM: protein of unknown function DUF35; KEGG: afu:AF0965 hypothetical protein; IMG reference gene:2503009072; PFAM: Rubredoxin-like zinc ribbon domain (DUF35_N); DUF35 OB-fold domain.
 
 0.943
Dalk_4046
PFAM: protein of unknown function DUF35; KEGG: afu:AF0965 hypothetical protein; IMG reference gene:2503009791; PFAM: Rubredoxin-like zinc ribbon domain (DUF35_N); DUF35 OB-fold domain.
 
 0.942
Dalk_1164
PFAM: protein of unknown function DUF35; KEGG: dol:Dole_1602 hypothetical protein; IMG reference gene:2503006866; PFAM: Rubredoxin-like zinc ribbon domain (DUF35_N); DUF35 OB-fold domain.
  
 0.925
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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