Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Dalk_3203TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: dol:Dole_2866 nifR3 family TIM-barrel protein; IMG reference gene:2503008932; PFAM: Dihydrouridine synthase (Dus); TIGRFAM: putative TIM-barrel protein, nifR3 family. (332 aa)    
Predicted Functional Partners:
Dalk_4135
TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: dol:Dole_0100 ribonuclease P protein component; IMG reference gene:2503009881; PFAM: Ribonuclease P; TIGRFAM: ribonuclease P protein component, eubacterial.
   
    0.717
Dalk_4646
KEGG: dol:Dole_2306 tRNA (guanine-N1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; IMG reference gene:2503010402; PFAM: tRNA (Guanine-1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase.
  
  
 0.654
Dalk_3204
PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: dol:Dole_2586 cell divisionFtsK/SpoIIIE; IMG reference gene:2503008933; PFAM: Ftsk gamma domain; FtsK/SpoIIIE family.
       0.639
Dalk_0554
TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: dol:Dole_2231 sun protein; IMG reference gene:2503006255; PFAM: NOL1/NOP2/sun family; NusB family; TIGRFAM: ribosomal RNA small subunit methyltransferase RsmB.
 
 
 0.621
Dalk_1195
PFAM: ribosomal protein S20; KEGG: sfu:Sfum_2087 ribosomal protein S20; IMG reference gene:2503006897; PFAM: Ribosomal protein S20; TIGRFAM: ribosomal protein S20.
  
  
 0.602
Dalk_1457
TIGRFAM: trigger factor; PFAM: peptidylprolyl isomerase FKBP-type; trigger factor domain protein; trigger factor domain; KEGG: dol:Dole_2692 trigger factor; IMG reference gene:2503007164; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; Bacterial trigger factor protein (TF); Bacterial trigger factor protein (TF) C-terminus; TIGRFAM: trigger factor.
 
    0.599
Dalk_1246
PFAM: inositol monophosphatase; KEGG: dol:Dole_0004 inositol-phosphate phosphatase; IMG reference gene:2503006949; PFAM: Inositol monophosphatase family.
  
    0.589
Dalk_4649
PFAM: ribosomal protein S16; KEGG: lme:LEUM_1485 SSU ribosomal protein S16P; IMG reference gene:2503010405; PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16.
   
    0.583
Dalk_4647
TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: gbm:Gbem_3429 16S rRNA processing protein RimM; IMG reference gene:2503010403; PFAM: PRC-barrel domain; RimM N-terminal domain; TIGRFAM: 16S rRNA processing protein RimM.
   
    0.581
Dalk_4114
PFAM: ribosomal protein L21; KEGG: dol:Dole_0086 ribosomal protein L21; IMG reference gene:2503009860; PFAM: Ribosomal prokaryotic L21 protein; TIGRFAM: ribosomal protein L21.
   
  
 0.577
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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