STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_3203TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: dol:Dole_2866 nifR3 family TIM-barrel protein; IMG reference gene:2503008932; PFAM: Dihydrouridine synthase (Dus); TIGRFAM: putative TIM-barrel protein, nifR3 family. (332 aa)    
Predicted Functional Partners:
Dalk_5106
Catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); IMG reference gene:2503010865; PFAM: Anticodon binding domain; Prolyl-tRNA synthetase, C-terminal; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: prolyl-tRNA synthetase, family I.
  
 
 0.879
Dalk_4135
TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: dol:Dole_0100 ribonuclease P protein component; IMG reference gene:2503009881; PFAM: Ribonuclease P; TIGRFAM: ribonuclease P protein component, eubacterial.
   
    0.671
Dalk_3204
PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: dol:Dole_2586 cell divisionFtsK/SpoIIIE; IMG reference gene:2503008933; PFAM: Ftsk gamma domain; FtsK/SpoIIIE family.
     
 0.667
Dalk_4646
KEGG: dol:Dole_2306 tRNA (guanine-N1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; IMG reference gene:2503010402; PFAM: tRNA (Guanine-1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase.
  
  
 0.656
Dalk_3254
KEGG: dol:Dole_0042 pantoate--beta-alanine ligase; TIGRFAM: pantoate/beta-alanine ligase; cytidyltransferase-related domain protein; PFAM: Pantoate-beta-alanine ligase; IMG reference gene:2503008984; PFAM: Pantoate-beta-alanine ligase; TIGRFAM: pantoate--beta-alanine ligase; cytidyltransferase-related domain.
  
    0.623
Dalk_0554
TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: dol:Dole_2231 sun protein; IMG reference gene:2503006255; PFAM: NOL1/NOP2/sun family; NusB family; TIGRFAM: ribosomal RNA small subunit methyltransferase RsmB.
 
 
 0.605
Dalk_4649
PFAM: ribosomal protein S16; KEGG: lme:LEUM_1485 SSU ribosomal protein S16P; IMG reference gene:2503010405; PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16.
   
    0.603
Dalk_4293
TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase class Ic; KEGG: dol:Dole_2533 glutamyl-tRNA synthetase; IMG reference gene:2503010041; PFAM: tRNA synthetases class I (E and Q), catalytic domain; TIGRFAM: glutamyl-tRNA synthetase, bacterial family.
  
 
 0.596
Dalk_4647
TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: gbm:Gbem_3429 16S rRNA processing protein RimM; IMG reference gene:2503010403; PFAM: PRC-barrel domain; RimM N-terminal domain; TIGRFAM: 16S rRNA processing protein RimM.
   
    0.591
Dalk_3446
Glutaminyl-tRNA synthetase; Catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; IMG reference gene:2503009178; PFAM: tRNA synthetases class I (E and Q), catalytic domain; tRNA synthetases class I (E and Q), anti-codon binding domain; TIGRFAM: glutaminyl-tRNA synthetase.
  
 
 0.588
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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