STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_3205TIGRFAM: queuosine biosynthesis protein QueD; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: mac:MA0956 6-pyruvoyltetrahydropterin synthase; IMG reference gene:2503008934; PFAM: 6-pyruvoyl tetrahydropterin synthase; TIGRFAM: queuosine biosynthesis protein QueD; 6-pyruvoyl tetrahydropterin synthase/QueD family protein. (122 aa)    
Predicted Functional Partners:
Dalk_4151
PFAM: Radical SAM domain protein; KEGG: sfu:Sfum_1985 radical SAM domain protein; IMG reference gene:2503009897; PFAM: Radical SAM superfamily.
 
 
 0.994
Dalk_4152
TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: sat:SYN_01561 queuosine biosynthesis protein; IMG reference gene:2503009898; PFAM: ExsB; TIGRFAM: queuosine biosynthesis protein QueC.
 
  
 0.944
Dalk_1236
PFAM: protein of unknown function DUF198; KEGG: dol:Dole_2224 hypothetical protein; IMG reference gene:2503006939; PFAM: Uncharacterized ACR, COG1469; TIGRFAM: TIGR00294 family protein.
 
  
 0.908
Dalk_3201
TIGRFAM: 7-cyano-7-deazaguanine reductase; PFAM: GTP cyclohydrolase I; KEGG: dol:Dole_2198 GTP cyclohydrolase I; IMG reference gene:2503008930; PFAM: GTP cyclohydrolase I; TIGRFAM: 7-cyano-7-deazaguanine reductase.
 
  
 0.820
Dalk_3206
TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ central domain protein; heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: dol:Dole_1492 chaperone protein DnaJ; IMG reference gene:2503008935; PFAM: DnaJ domain; DnaJ central domain (4 repeats); DnaJ C terminal region; TIGRFAM: chaperone protein DnaJ.
       0.720
Dalk_1140
PFAM: cyclic nucleotide-binding; type IV pilus assembly PilZ; KEGG: rru:Rru_A0496 cyclic nucleotide-binding domain-containing protein; IMG reference gene:2503006842; PFAM: PilZ domain; Cyclic nucleotide-binding domain; TIGRFAM: Myxococcus xanthus paralogous domain TIGR02266.
    
  0.598
Dalk_3889
PFAM: cyclic nucleotide-binding; type IV pilus assembly PilZ; KEGG: mag:amb0493 CheY-like receiver; IMG reference gene:2503009633; PFAM: PilZ domain; Cyclic nucleotide-binding domain; TIGRFAM: Myxococcus xanthus paralogous domain TIGR02266.
    
  0.598
Dalk_0513
PFAM: GGDEF domain containing protein; cyclic nucleotide-binding; Patched family protein; KEGG: dol:Dole_0610 exporter of the RND superfamily protein-like protein; IMG reference gene:2503006213; PFAM: GGDEF domain; MMPL family; Cyclic nucleotide-binding domain.
    
  0.571
Dalk_2094
PFAM: cyclic nucleotide-binding; Patatin; KEGG: afw:Anae109_3179 cyclic nucleotide-binding protein; IMG reference gene:2503007813; PFAM: Patatin-like phospholipase; Cyclic nucleotide-binding domain.
    
  0.570
Dalk_0217
PFAM: cyclic nucleotide-binding; tyrosine protein kinase; Serine/threonine protein kinase-related; SMART: serine/threonine protein kinase; KEGG: mab:MAB_0033c serine/threonine-protein kinase PknB; IMG reference gene:2503005913; PFAM: Protein kinase domain; Cyclic nucleotide-binding domain.
    
  0.544
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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