STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_3205TIGRFAM: queuosine biosynthesis protein QueD; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: mac:MA0956 6-pyruvoyltetrahydropterin synthase; IMG reference gene:2503008934; PFAM: 6-pyruvoyl tetrahydropterin synthase; TIGRFAM: queuosine biosynthesis protein QueD; 6-pyruvoyl tetrahydropterin synthase/QueD family protein. (122 aa)    
Predicted Functional Partners:
Dalk_4151
PFAM: Radical SAM domain protein; KEGG: sfu:Sfum_1985 radical SAM domain protein; IMG reference gene:2503009897; PFAM: Radical SAM superfamily.
 
 
 0.992
Dalk_4152
TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: sat:SYN_01561 queuosine biosynthesis protein; IMG reference gene:2503009898; PFAM: ExsB; TIGRFAM: queuosine biosynthesis protein QueC.
 
  
 0.936
Dalk_1236
PFAM: protein of unknown function DUF198; KEGG: dol:Dole_2224 hypothetical protein; IMG reference gene:2503006939; PFAM: Uncharacterized ACR, COG1469; TIGRFAM: TIGR00294 family protein.
 
  
 0.892
Dalk_3201
TIGRFAM: 7-cyano-7-deazaguanine reductase; PFAM: GTP cyclohydrolase I; KEGG: dol:Dole_2198 GTP cyclohydrolase I; IMG reference gene:2503008930; PFAM: GTP cyclohydrolase I; TIGRFAM: 7-cyano-7-deazaguanine reductase.
 
  
 0.843
Dalk_3206
TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ central domain protein; heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: dol:Dole_1492 chaperone protein DnaJ; IMG reference gene:2503008935; PFAM: DnaJ domain; DnaJ central domain (4 repeats); DnaJ C terminal region; TIGRFAM: chaperone protein DnaJ.
       0.704
Dalk_3075
PFAM: protein of unknown function DUF34; KEGG: dau:Daud_0497 protein of unknown function DUF34; IMG reference gene:2503008803; PFAM: NIF3 (NGG1p interacting factor 3); TIGRFAM: dinuclear metal center protein, YbgI/SA1388 family.
    
 0.640
Dalk_2505
Adenosylhomocysteinase; Catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; IMG reference gene:2503008226; PFAM: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; S-adenosyl-L-homocysteine hydrolase; TIGRFAM: adenosylhomocysteinase.
   
   0.623
Dalk_3820
Cysteine synthase; TIGRFAM: cysteinyl-tRNA synthetase; cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; Cysteinyl-tRNA synthetase class Ia DALR; Cysteinyl-tRNA synthetase class Ia; KEGG: dol:Dole_1166 cysteine synthase; IMG reference gene:2503009564; PFAM: tRNA synthetases class I (C) catalytic domain; DALR domain; Pyridoxal-phosphate dependent enzyme; TIGRFAM: cysteine synthases; cysteinyl-tRNA synthetase; cysteine synthase B.
  
  
 0.583
Dalk_0769
KEGG: dol:Dole_1667 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia DALR; tRNA synthetase class I (M); Cysteinyl-tRNA synthetase class Ia; IMG reference gene:2503006470; PFAM: tRNA synthetases class I (C) catalytic domain; DALR domain; TIGRFAM: cysteinyl-tRNA synthetase.
  
  
 0.579
Dalk_1354
PFAM: triosephosphate isomerase; KEGG: dol:Dole_0499 triose-phosphate isomerase; IMG reference gene:2503007059; PFAM: Triosephosphate isomerase; TIGRFAM: triosephosphate isomerase.
   
   0.568
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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