STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_3208KEGG: cch:Cag_0958 hypothetical protein; IMG reference gene:2503008937. (116 aa)    
Predicted Functional Partners:
Dalk_3207
Hypothetical protein Dalk_3207; IMG reference gene:2503008936.
       0.773
Dalk_1553
Membrane protein-like protein; KEGG: tel:tlr0353 hypothetical protein; IMG reference gene:2503007263; TIGRFAM: TIGR03943 family protein.
  
     0.555
Dalk_4051
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: scl:sce4533 hypothetical protein; IMG reference gene:2503009796; PFAM: Flavin containing amine oxidoreductase.
  
     0.539
Dalk_4444
Putative succinate dehydrogenase/fumarate reductase Fe-S protein subunit-like protein; KEGG: zmo:ZMO0313 L-2-amino-thiazoline-4-carboxylic acid hydrolase; IMG reference gene:2503010195.
  
     0.508
Dalk_0385
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: afu:AF0627 iron-sulfur cluster binding protein; IMG reference gene:2503006082.
  
     0.488
Dalk_3206
TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ central domain protein; heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: dol:Dole_1492 chaperone protein DnaJ; IMG reference gene:2503008935; PFAM: DnaJ domain; DnaJ central domain (4 repeats); DnaJ C terminal region; TIGRFAM: chaperone protein DnaJ.
 
     0.487
Dalk_4196
Putative corrinoid enzyme (methylcobamide:CoM methyltransferase-related protein); PFAM: Uroporphyrinogen decarboxylase (URO-D); KEGG: dol:Dole_0062 uroporphyrinogen decarboxylase; IMG reference gene:2503009943; PFAM: Uroporphyrinogen decarboxylase (URO-D).
  
     0.472
Dalk_0051
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mth:MTH745 hypothetical protein; IMG reference gene:2503005746.
  
     0.461
Dalk_4975
TIGRFAM: C_GCAxxG_C_C family protein; KEGG: dth:DICTH_1787 redox family protein; IMG reference gene:2503010734; PFAM: Putative redox-active protein (C_GCAxxG_C_C); TIGRFAM: C_GCAxxG_C_C family probable redox protein.
  
     0.447
Dalk_2965
PFAM: protein of unknown function DUF169; KEGG: gur:Gura_2533 hypothetical protein; IMG reference gene:2503008692; PFAM: Uncharacterised ArCR, COG2043.
  
     0.423
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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