STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_3308TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: dvl:Dvul_1852 acyl carrier protein; IMG reference gene:2503009038; PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein. (76 aa)    
Predicted Functional Partners:
Dalk_1754
PFAM: Acyl transferase; KEGG: sat:SYN_01700 malonyl-CoA-[acyl-carrier-protein] transacylase; IMG reference gene:2503007465; PFAM: Acyl transferase domain; TIGRFAM: malonyl CoA-acyl carrier protein transacylase.
 
 0.994
Dalk_3440
TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: dau:Daud_0641 malonyl CoA-acyl carrier protein transacylase; IMG reference gene:2503009172; PFAM: Acyl transferase domain; TIGRFAM: malonyl CoA-acyl carrier protein transacylase.
 
 0.994
Dalk_3709
KEGG: scl:sce2886 hypothetical protein; IMG reference gene:2503009453.
   
 0.993
Dalk_3309
3-Oxoacyl-(acyl carrier protein) synthase II; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; KEGG: tye:THEYE_A0103 beta-ketoacyl-acyl carrier protein synthase II; IMG reference gene:2503009039; PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: beta-ketoacyl-acyl-carrier-protein synthase II.
 
 0.991
Dalk_2692
Ribosomal protein L13; In Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; IMG reference gene:2503008415; PFAM: Ribosomal protein L13; TIGRFAM: ribosomal protein L13, bacterial type.
   
   0.985
Dalk_2270
PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: deh:cbdb_A685 putative [Fe] hydrogenase, HymC subunit; IMG reference gene:2503007990; PFAM: 2Fe-2S iron-sulfur cluster binding domain.
   
 0.981
Dalk_1750
3-Oxoacyl-(acyl carrier protein) synthase II; PFAM: Beta-ketoacyl synthase; KEGG: sat:SYN_01694 3-oxoacyl-[acyl-carrier-protein] synthase; IMG reference gene:2503007461; PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain.
  
 0.976
Dalk_4114
PFAM: ribosomal protein L21; KEGG: dol:Dole_0086 ribosomal protein L21; IMG reference gene:2503009860; PFAM: Ribosomal prokaryotic L21 protein; TIGRFAM: ribosomal protein L21.
  
 
 0.975
Dalk_1905
TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; KEGG: dol:Dole_0718 ribosomal protein L14; IMG reference gene:2503007617; PFAM: Ribosomal protein L14p/L23e; TIGRFAM: ribosomal protein L14, bacterial/organelle.
   
   0.973
Dalk_2272
PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: det:DET0728 [Fe] hydrogenase, HymA subunit, putative; IMG reference gene:2503007992; PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit.
   
 0.971
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.