STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_3359N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: cpe:CPE0565 N-acetylmuramoyl-L-alanine amidase; IMG reference gene:2503009089; PFAM: N-acetylmuramoyl-L-alanine amidase. (166 aa)    
Predicted Functional Partners:
Dalk_3360
KEGG: hch:HCH_03727 hypothetical protein; IMG reference gene:2503009090.
       0.561
Dalk_3358
PFAM: regulatory protein TetR; KEGG: bbr:BB3154 TetR family transcriptional regulator; IMG reference gene:2503009088; PFAM: Bacterial regulatory proteins, tetR family.
       0.519
Dalk_0901
PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; KEGG: dol:Dole_2225 peptidase S13 D-Ala-D-Ala carboxypeptidase C; IMG reference gene:2503006602; PFAM: D-Ala-D-Ala carboxypeptidase 3 (S13) family.
     
 0.432
Dalk_0960
PFAM: aminoglycoside phosphotransferase; protein of unknown function DUF227; Nucleotidyl transferase; KEGG: dol:Dole_1992 aminoglycoside phosphotransferase; IMG reference gene:2503006661; PFAM: Nucleotidyl transferase; Phosphotransferase enzyme family.
     
 0.413
Dalk_1093
PFAM: beta-lactamase; KEGG: mva:Mvan_3027 serine-type D-Ala-D-Ala carboxypeptidase; IMG reference gene:2503006794; PFAM: Beta-lactamase.
     
 0.404
Dalk_3805
PFAM: beta-lactamase; KEGG: dol:Dole_0591 beta-lactamase; IMG reference gene:2503009549; PFAM: Beta-lactamase.
     
 0.404
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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