STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_3374PFAM: peptidyl-tRNA hydrolase; KEGG: dol:Dole_2819 aminoacyl-tRNA hydrolase; IMG reference gene:2503009104; PFAM: Peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase. (224 aa)    
Predicted Functional Partners:
Dalk_3375
Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; The Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; IMG reference gene:2503009105; PFAM: Ribosomal L25p family; TIGRFAM: ribosomal protein L25, Ctc-form.
 
  
 0.929
Dalk_1131
PFAM: Protein of unknown function DUF933; KEGG: dol:Dole_0142 hypothetical protein; IMG reference gene:2503006833; PFAM: Protein of unknown function (DUF933); TIGRFAM: GTP-binding protein YchF.
 
  
 0.911
Dalk_3376
KEGG: dol:Dole_2817 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; IMG reference gene:2503009106; PFAM: Phosphoribosyl transferase domain; TIGRFAM: ribose-phosphate pyrophosphokinase.
 
 
 0.841
Dalk_3710
KEGG: dol:Dole_0383 hydroxymethylbutenyl pyrophosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; IMG reference gene:2503009454; PFAM: LytB protein; UbiA prenyltransferase family; TIGRFAM: (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming).
    
 
 0.809
Dalk_0050
KEGG: dol:Dole_1705 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; IMG reference gene:2503005745; PFAM: Helicase conserved C-terminal domain; TRCF domain; CarD-like/TRCF domain; DEAD/DEAH box helicase; TIGRFAM: transcription-repair coupling factor (mfd).
  
  
 0.779
Dalk_2692
Ribosomal protein L13; In Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; IMG reference gene:2503008415; PFAM: Ribosomal protein L13; TIGRFAM: ribosomal protein L13, bacterial type.
  
    0.714
Dalk_5213
TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: pca:Pcar_2692 peptide chain release factor 1; IMG reference gene:2503010972; PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 1.
 
   
 0.706
Dalk_4115
Ribosomal protein L27; Involved in the peptidyltransferase reaction during translation; IMG reference gene:2503009861; PFAM: Ribosomal L27 protein; TIGRFAM: ribosomal protein L27.
 
  
 0.688
Dalk_1562
TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: dol:Dole_1767 peptide chain release factor 2; IMG reference gene:2503007272; PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 2.
 
  
 0.679
Dalk_0117
GMP synthase, large subunit; Contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; IMG reference gene:2503005812; PFAM: Glutamine amidotransferase class-I; GMP synthase C terminal domain; NAD synthase; TIGRFAM: GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit; GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit.
  
  
 0.661
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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