STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_3445PFAM: phospholipase D/Transphosphatidylase; KEGG: ote:Oter_2866 phospholipase D/transphosphatidylase; IMG reference gene:2503009177; PFAM: Phospholipase D Active site motif. (467 aa)    
Predicted Functional Partners:
Dalk_0585
PFAM: protease-associated PA domain protein; protein of unknown function DUF214; KEGG: dps:DP1755 hypothetical protein; IMG reference gene:2503006286; PFAM: Predicted permease; Peptidase family M28.
    
 0.821
Dalk_3444
Hypothetical protein Dalk_3444; IMG reference gene:2503009176.
       0.773
Dalk_2947
PFAM: phosphatidylglycerophosphatase A; KEGG: dol:Dole_1265 phosphatidylglycerophosphatase A; IMG reference gene:2503008673; PFAM: Phosphatidylglycerophosphatase A.
     
 0.751
Dalk_1932
KEGG: dol:Dole_1910 guanylate kinase; PFAM: guanylate kinase; SMART: guanylate kinase/L-type calcium channel region; IMG reference gene:2503007649; PFAM: Guanylate kinase; TIGRFAM: guanylate kinase.
    
  0.747
Dalk_2648
TIGRFAM: Fe-S cluster assembly protein NifU; PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: sfu:Sfum_2684 Fe-S cluster assembly protein NifU; IMG reference gene:2503008370; PFAM: NifU-like N terminal domain; BFD-like [2Fe-2S] binding domain; NifU-like domain; TIGRFAM: Fe-S cluster assembly protein NifU.
   
 
 0.699
Dalk_0418
TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: dol:Dole_2485 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; IMG reference gene:2503006115; PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase.
 
  
 0.687
Dalk_2267
PFAM: nitrogen-fixing NifU domain protein; KEGG: sfu:Sfum_0595 nitrogen-fixing NifU domain protein; IMG reference gene:2503007987; PFAM: NifU-like N terminal domain.
   
 
 0.665
Dalk_2387
PFAM: nitrogen-fixing NifU domain protein; KEGG: sfu:Sfum_0595 nitrogen-fixing NifU domain protein; IMG reference gene:2503008107; PFAM: NifU-like N terminal domain.
   
 
 0.665
Dalk_4352
PFAM: nitrogen-fixing NifU domain protein; KEGG: pth:PTH_0581 NifU-like protein; IMG reference gene:2503010100; PFAM: NifU-like N terminal domain.
   
 
 0.665
Dalk_4969
PFAM: nitrogen-fixing NifU domain protein; KEGG: dol:Dole_0318 NifU domain-containing protein; IMG reference gene:2503010728; PFAM: NifU-like N terminal domain.
   
 
 0.665
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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