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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_3446Glutaminyl-tRNA synthetase; Catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; IMG reference gene:2503009178; PFAM: tRNA synthetases class I (E and Q), catalytic domain; tRNA synthetases class I (E and Q), anti-codon binding domain; TIGRFAM: glutaminyl-tRNA synthetase. (588 aa)    
Predicted Functional Partners:
Dalk_5106
Catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); IMG reference gene:2503010865; PFAM: Anticodon binding domain; Prolyl-tRNA synthetase, C-terminal; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: prolyl-tRNA synthetase, family I.
 
 0.999
Dalk_1900
TIGRFAM: ribosomal protein L6 signature 1; PFAM: ribosomal protein L6; KEGG: dol:Dole_0723 ribosomal protein L6; IMG reference gene:2503007612; PFAM: Ribosomal protein L6; TIGRFAM: ribosomal protein L6, bacterial type.
   
 0.998
Dalk_1913
PFAM: Ribosomal protein L25/L23; KEGG: dol:Dole_0710 ribosomal protein L25/L23; IMG reference gene:2503007625; PFAM: Ribosomal protein L23.
   
 0.998
Dalk_2692
Ribosomal protein L13; In Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; IMG reference gene:2503008415; PFAM: Ribosomal protein L13; TIGRFAM: ribosomal protein L13, bacterial type.
  
 0.998
Dalk_1896
PFAM: ribosomal protein L15; KEGG: dol:Dole_0727 ribosomal protein L15; IMG reference gene:2503007608; PFAM: Ribosomal protein L18e/L15; TIGRFAM: ribosomal protein L15, bacterial/organelle.
   
 0.997
Dalk_1899
TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: chy:CHY_2293 50S ribosomal protein L18; IMG reference gene:2503007611; PFAM: Ribosomal L18p/L5e family; TIGRFAM: ribosomal protein L18, bacterial type.
   
 0.997
Dalk_1904
TIGRFAM: ribosomal protein L24; PFAM: KOW domain protein; KEGG: dol:Dole_0719 ribosomal protein L24; IMG reference gene:2503007616; PFAM: KOW motif; TIGRFAM: ribosomal protein L24, bacterial/organelle.
   
 0.997
Dalk_1910
TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17; KEGG: dol:Dole_0713 ribosomal protein L22; IMG reference gene:2503007622; PFAM: Ribosomal protein L22p/L17e; TIGRFAM: ribosomal protein L22, bacterial type.
   
 0.997
Dalk_1914
PFAM: ribosomal protein L4/L1e; KEGG: dol:Dole_0709 ribosomal protein L4/L1e; IMG reference gene:2503007626; PFAM: Ribosomal protein L4/L1 family; TIGRFAM: 50S ribosomal protein L4, bacterial/organelle.
  
 0.997
Dalk_1897
PFAM: ribosomal protein L30; KEGG: dol:Dole_0726 ribosomal protein L30; IMG reference gene:2503007609; PFAM: Ribosomal protein L30p/L7e; TIGRFAM: ribosomal protein L30, bacterial/organelle.
   
 0.996
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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