STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_3466KEGG: hypothetical protein; K10592 E3 ubiquitin-protein ligase HUWE1; IMG reference gene:2503009198. (156 aa)    
Predicted Functional Partners:
Dalk_3465
PFAM: UvrD/REP helicase; KEGG: dol:Dole_1171 UvrD/REP helicase; IMG reference gene:2503009197; PFAM: UvrD/REP helicase; TIGRFAM: TIGR00375 family protein.
       0.570
Dalk_3464
KEGG: LOC100091385; hypothetical protein LOC100091385; IMG reference gene:2503009196; PFAM: Protein of unknown function, DUF255.
       0.524
Dalk_3463
PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: dol:Dole_0130 cytochrome c biogenesis protein transmembrane region; IMG reference gene:2503009195; PFAM: Cytochrome C biogenesis protein transmembrane region.
       0.507
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.