STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_3468Hypothetical protein Dalk_3468; KEGG: cts:Ctha_2591 TPR repeat-containing protein; IMG reference gene:2503009200. (260 aa)    
Predicted Functional Partners:
Dalk_3469
KEGG: pdi:BDI_0951 hypothetical protein; IMG reference gene:2503009201.
     0.987
Dalk_3474
KEGG: pgi:PG1580 hypothetical protein; IMG reference gene:2503009206; PFAM: Protein of unknown function DUF58.
 
  
 0.948
Dalk_3471
PFAM: von Willebrand factor type A; KEGG: bvu:BVU_3289 aerotolerance-related membrane protein; IMG reference gene:2503009203; PFAM: von Willebrand factor type A domain.
 
   
 0.947
Dalk_3473
KEGG: bfr:BF2420 hypothetical protein; IMG reference gene:2503009205.
 
     0.944
Dalk_3470
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; KEGG: vvu:VV2_1562 TPR repeat-containing protein; IMG reference gene:2503009202; PFAM: Tetratricopeptide repeat.
 
     0.941
Dalk_3472
TIGRFAM: conserved hypothetical protein; PFAM: von Willebrand factor type A; KEGG: mca:MCA3085 BatB protein, putative; IMG reference gene:2503009204; PFAM: von Willebrand factor type A domain.
 
   
 0.903
Dalk_0662
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_2960 TPR repeat-containing protein; IMG reference gene:2503006363.
 
 0.856
Dalk_1507
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ter:Tery_3996 tetratricopeptide TPR_2; IMG reference gene:2503007217; PFAM: Tetratricopeptide repeat.
  
 0.816
Dalk_3467
TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: dol:Dole_0632 excinuclease ABC, A subunit; IMG reference gene:2503009199; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit.
   
   0.808
Dalk_0117
GMP synthase, large subunit; Contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; IMG reference gene:2503005812; PFAM: Glutamine amidotransferase class-I; GMP synthase C terminal domain; NAD synthase; TIGRFAM: GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit; GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit.
  
 
  0.806
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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