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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_3473KEGG: bfr:BF2420 hypothetical protein; IMG reference gene:2503009205. (323 aa)    
Predicted Functional Partners:
Dalk_3469
KEGG: pdi:BDI_0951 hypothetical protein; IMG reference gene:2503009201.
 
     0.946
Dalk_3468
Hypothetical protein Dalk_3468; KEGG: cts:Ctha_2591 TPR repeat-containing protein; IMG reference gene:2503009200.
 
     0.944
Dalk_3470
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; KEGG: vvu:VV2_1562 TPR repeat-containing protein; IMG reference gene:2503009202; PFAM: Tetratricopeptide repeat.
 
     0.941
Dalk_3474
KEGG: pgi:PG1580 hypothetical protein; IMG reference gene:2503009206; PFAM: Protein of unknown function DUF58.
 
    0.926
Dalk_3471
PFAM: von Willebrand factor type A; KEGG: bvu:BVU_3289 aerotolerance-related membrane protein; IMG reference gene:2503009203; PFAM: von Willebrand factor type A domain.
 
     0.925
Dalk_3472
TIGRFAM: conserved hypothetical protein; PFAM: von Willebrand factor type A; KEGG: mca:MCA3085 BatB protein, putative; IMG reference gene:2503009204; PFAM: von Willebrand factor type A domain.
 
     0.898
Dalk_3467
TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: dol:Dole_0632 excinuclease ABC, A subunit; IMG reference gene:2503009199; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit.
       0.773
Dalk_0665
TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; KEGG: aoe:Clos_1477 flagellar basal-body rod protein FlgC; IMG reference gene:2503006366; PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgC.
   
   0.622
Dalk_4876
dephospho-CoA kinase; KEGG: rpd:RPD_2693 hypothetical protein; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; protein of unknown function DUF169; IMG reference gene:2503010634; PFAM: Dephospho-CoA kinase; Uncharacterised ArCR, COG2043; TIGRFAM: dephospho-CoA kinase.
  
    0.576
Dalk_3475
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: emi:Emin_1126 ATPase; IMG reference gene:2503009207; PFAM: ATPase family associated with various cellular activities (AAA).
  
    0.560
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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