STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_3560KEGG: sfu:Sfum_1873 hypothetical protein; IMG reference gene:2503009292. (126 aa)    
Predicted Functional Partners:
Dalk_3556
TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: putative head morphogenesis protein SPP1 gp7; protein of unknown function DUF935; KEGG: bpt:Bpet4408 hypothetical protein; IMG reference gene:2503009288; PFAM: Protein of unknown function (DUF935); Phage Mu protein F like protein; TIGRFAM: phage putative head morphogenesis protein, SPP1 gp7 family.
  
    0.855
Dalk_3557
KEGG: sfu:Sfum_1876 hypothetical protein; IMG reference gene:2503009289.
       0.801
Dalk_3555
TIGRFAM: phage virion morphogenesis protein; KEGG: rsq:Rsph17025_2099 phage virion morphogenesis protein; IMG reference gene:2503009287; PFAM: Phage virion morphogenesis family.
       0.792
Dalk_3558
KEGG: bcj:BCAS0529 hypothetical protein TerS; IMG reference gene:2503009290; PFAM: Protein of unknown function (DUF3486).
       0.782
Dalk_3559
Hypothetical protein Dalk_3559; IMG reference gene:2503009291.
       0.773
Dalk_3554
KEGG: cvi:CV_2135 hypothetical protein; IMG reference gene:2503009286.
  
    0.615
Dalk_3561
Transcriptional regulator, TraR/DksA family; TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein, TraR family; PFAM: zinc finger DksA/TraR C4-type; KEGG: cvi:CV_2144 hypothetical protein; IMG reference gene:2503009293; PFAM: Prokaryotic dksA/traR C4-type zinc finger; TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein, TraR family.
  
    0.562
Dalk_3562
KEGG: cts:Ctha_1047 hypothetical protein; IMG reference gene:2503009294; PFAM: Protein of unknown function (DUF3154).
       0.541
Dalk_3563
PFAM: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: pdi:BDI_3612 putative N-acetylmuramoyl-L-alanine amidase; IMG reference gene:2503009295; PFAM: N-acetylmuramoyl-L-alanine amidase.
       0.541
Dalk_3553
Hypothetical protein Dalk_3553; IMG reference gene:2503009285.
       0.410
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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