STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_3564Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: dol:Dole_2102 Crp/FNR family transcriptional regulator; IMG reference gene:2503009296; PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain. (227 aa)    
Predicted Functional Partners:
Dalk_4144
Pyruvate-ferredoxin oxidoreductase, alpha subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; IMG reference gene:2503009890; PFAM: Domain of unknown function; domain; Pyruvate ferredoxin/flavodoxin oxidoreductase; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: pyruvate:ferredoxin (flavodoxin [...]
    
 0.835
Dalk_0873
KEGG: hch:HCH_00809 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; IMG reference gene:2503006574; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; Hpt domain; PAS fold; TIGRFAM: PAS domain S-box.
   
 0.773
Dalk_2865
Chloride channel core; PFAM: CBS domain containing protein; Chloride channel core; KEGG: bth:BT_3944 putative chloride channel protein; IMG reference gene:2503008590; PFAM: CBS domain; Voltage gated chloride channel.
  
 0.770
Dalk_4218
Adenylate/guanylate cyclase with GAF sensor(s); PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; GAF domain protein; KEGG: pth:PTH_1596 hypothetical protein; IMG reference gene:2503009965; PFAM: Adenylate and Guanylate cyclase catalytic domain; GAF domain.
   
 0.770
Dalk_3797
PFAM: CBS domain containing protein; KEGG: pth:PTH_2126 CBS domain-containing protein; IMG reference gene:2503009541; PFAM: CBS domain.
   
 0.759
Dalk_3825
PFAM: CBS domain containing protein; KEGG: dol:Dole_0795 CBS domain-containing protein; IMG reference gene:2503009569; PFAM: CBS domain.
   
 0.759
Dalk_0374
PFAM: cyclic nucleotide-binding; KEGG: abo:ABO_0537 cyclic nucleotide-binding protein; IMG reference gene:2503006071; PFAM: Cyclic nucleotide-binding domain.
  
  
 0.744
Dalk_3447
KEGG: sfu:Sfum_0006 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); IMG reference gene:2503009179; PFAM: CBS domain; SIS domain; TIGRFAM: KpsF/GutQ family protein.
     
 0.743
Dalk_0218
PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: mjl:Mjls_0019 protein phosphatase 2C domain-containing protein; IMG reference gene:2503005914; PFAM: Stage II sporulation protein E (SpoIIE).
     
 0.727
Dalk_2477
PFAM: Stage II sporulation E family protein; Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: sfu:Sfum_3435 protein serine/threonine phosphatases; IMG reference gene:2503008198; PFAM: Protein phosphatase 2C.
     
 0.727
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.