STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_3565PFAM: Cupin 2 conserved barrel domain protein; KEGG: dde:Dde_2303 hypothetical protein; IMG reference gene:2503009297; PFAM: Cupin domain. (105 aa)    
Predicted Functional Partners:
Dalk_3566
PFAM: CBS domain containing protein; KEGG: swo:Swol_1883 CBS domain containing membrane protein; IMG reference gene:2503009298; PFAM: CBS domain.
 
     0.696
Dalk_3567
PFAM: HPP family protein; KEGG: dps:DP1224 hypothetical protein; IMG reference gene:2503009299; PFAM: HPP family.
 
     0.668
Dalk_0447
PFAM: nucleoside recognition domain protein; KEGG: dde:Dde_3102 hypothetical protein; IMG reference gene:2503006147.
  
     0.661
Dalk_4372
PFAM: beta-lactamase domain protein; KEGG: dvl:Dvul_0948 beta-lactamase domain-containing protein; IMG reference gene:2503010120; PFAM: Metallo-beta-lactamase superfamily.
  
     0.652
Dalk_2376
KEGG: dde:Dde_0372 hypothetical protein; IMG reference gene:2503008096.
  
  
  0.635
Dalk_4984
PFAM: acetate and butyrate kinase; phosphate acetyl/butaryl transferase; KEGG: bca:BCE_4236 butyrate kinase; IMG reference gene:2503010743; PFAM: Acetokinase family; Phosphate acetyl/butaryl transferase; TIGRFAM: butyrate kinase.
    
 0.615
Dalk_2474
PFAM: TPR repeat-containing protein; protein of unknown function DUF181; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dol:Dole_1241 hypothetical protein; IMG reference gene:2503008195; PFAM: YcaO-like family; Tetratricopeptide repeat; TIGRFAM: uncharacterized domain.
  
     0.598
Dalk_2695
PFAM: protein of unknown function DUF1566; KEGG: dol:Dole_0436 hypothetical protein; IMG reference gene:2503008418; PFAM: Protein of unknown function (DUF1566).
  
     0.563
Dalk_2924
PFAM: ferredoxin thioredoxin reductase beta chain; KEGG: sfu:Sfum_0349 hypothetical protein; IMG reference gene:2503008650; PFAM: Ferredoxin thioredoxin reductase catalytic beta chain.
  
     0.561
Dalk_2762
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: sat:SYN_02087 putative cytoplasmic protein; IMG reference gene:2503008485; PFAM: Pyridoxamine 5'-phosphate oxidase.
 
    0.550
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.