STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_3600TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: dol:Dole_1735 TonB family protein; IMG reference gene:2503009332; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain. (245 aa)    
Predicted Functional Partners:
Dalk_3599
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dol:Dole_1736 biopolymer transport protein ExbD/TolR; IMG reference gene:2503009331; PFAM: Biopolymer transport protein ExbD/TolR.
 
 
 0.988
Dalk_0342
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rru:Rru_A1458 TonB-dependent receptor; IMG reference gene:2503006039; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain.
 
 
 0.971
Dalk_3525
PFAM: MotA/TolQ/ExbB proton channel; KEGG: dol:Dole_1738 MotA/TolQ/ExbB proton channel; IMG reference gene:2503009257; PFAM: MotA/TolQ/ExbB proton channel family.
 
 
 0.955
Dalk_3681
PFAM: MotA/TolQ/ExbB proton channel; KEGG: dol:Dole_1738 MotA/TolQ/ExbB proton channel; IMG reference gene:2503009425; PFAM: MotA/TolQ/ExbB proton channel family.
 
 
 0.954
Dalk_3527
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dol:Dole_1736 biopolymer transport protein ExbD/TolR; IMG reference gene:2503009259; PFAM: Biopolymer transport protein ExbD/TolR.
 
 
 0.948
Dalk_3601
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: aha:AHA_3439 TPR-repeat-containing protein; IMG reference gene:2503009333.
 
     0.937
Dalk_3526
PFAM: MotA/TolQ/ExbB proton channel; KEGG: dol:Dole_1737 MotA/TolQ/ExbB proton channel; IMG reference gene:2503009258; PFAM: MotA/TolQ/ExbB proton channel family.
 
 
 0.912
Dalk_3682
PFAM: MotA/TolQ/ExbB proton channel; KEGG: dol:Dole_1737 MotA/TolQ/ExbB proton channel; IMG reference gene:2503009426; PFAM: MotA/TolQ/ExbB proton channel family.
 
 
 0.908
Dalk_4324
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: csa:Csal_0094 TonB-dependent receptor; IMG reference gene:2503010072; PFAM: TonB-dependent Receptor Plug Domain.
  
 
 0.870
Dalk_3143
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dol:Dole_2212 biopolymer transport TolR; IMG reference gene:2503008872; PFAM: Biopolymer transport protein ExbD/TolR; TIGRFAM: TolR protein.
  
 
 0.869
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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