STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_3682PFAM: MotA/TolQ/ExbB proton channel; KEGG: dol:Dole_1737 MotA/TolQ/ExbB proton channel; IMG reference gene:2503009426; PFAM: MotA/TolQ/ExbB proton channel family. (202 aa)    
Predicted Functional Partners:
Dalk_3527
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dol:Dole_1736 biopolymer transport protein ExbD/TolR; IMG reference gene:2503009259; PFAM: Biopolymer transport protein ExbD/TolR.
 
 
 0.968
Dalk_3599
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dol:Dole_1736 biopolymer transport protein ExbD/TolR; IMG reference gene:2503009331; PFAM: Biopolymer transport protein ExbD/TolR.
 
 
 0.968
Dalk_3143
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dol:Dole_2212 biopolymer transport TolR; IMG reference gene:2503008872; PFAM: Biopolymer transport protein ExbD/TolR; TIGRFAM: TolR protein.
 
 
 0.955
Dalk_3528
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: dol:Dole_1735 TonB family protein; IMG reference gene:2503009260; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain.
 
 
 0.915
Dalk_3680
KEGG: dde:Dde_2152 hypothetical protein; IMG reference gene:2503009424; PFAM: Protein of unknown function (DUF3450).
 
  
 0.914
Dalk_3600
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: dol:Dole_1735 TonB family protein; IMG reference gene:2503009332; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain.
 
 
 0.908
Dalk_3681
PFAM: MotA/TolQ/ExbB proton channel; KEGG: dol:Dole_1738 MotA/TolQ/ExbB proton channel; IMG reference gene:2503009425; PFAM: MotA/TolQ/ExbB proton channel family.
 
    
0.842
Dalk_3144
TIGRFAM: TonB family protein; KEGG: hha:Hhal_2216 TonB, C-terminal domain; IMG reference gene:2503008873; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain.
  
 
 0.828
Dalk_3145
TIGRFAM: TonB family protein; KEGG: dol:Dole_2211 TonB family protein; IMG reference gene:2503008874; TIGRFAM: TonB family C-terminal domain.
  
 
 0.828
Dalk_4738
TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; translation initiation factor IF-2 domain protein; Miro domain protein; KEGG: dol:Dole_3035 translation initiation factor IF-2; IMG reference gene:2503010495; PFAM: Elongation factor Tu domain 2; Translation-initiation factor 2; Translation initiation factor IF-2, N-terminal region; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation initiation factor IF-2.
  
 
 0.805
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.