STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_3718TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: dol:Dole_2516 DNA repair protein RecN; IMG reference gene:2503009462; PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: DNA repair protein RecN. (568 aa)    
Predicted Functional Partners:
Dalk_2945
KEGG: dol:Dole_1267 RecA protein; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase; IMG reference gene:2503008671; PFAM: recA bacterial DNA recombination protein; TIGRFAM: protein RecA.
  
  
 0.885
Dalk_2674
KEGG: cth:Cthe_0773 SOS-response transcriptional repressor, LexA; TIGRFAM: LexA repressor; PFAM: LexA DNA-binding domain protein; peptidase S24 and S26 domain protein; IMG reference gene:2503008397; PFAM: LexA DNA binding domain; Peptidase S24-like; TIGRFAM: SOS regulatory protein LexA.
   
  
 0.856
Dalk_4389
PFAM: ATP-NAD/AcoX kinase; KEGG: dol:Dole_2582 ATP-NAD/AcoX kinase; IMG reference gene:2503010137; PFAM: ATP-NAD kinase.
 
  
 0.799
Dalk_2747
DNA polymerase I; KEGG: dol:Dole_2573 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein class 2; IMG reference gene:2503008470; PFAM: 3'-5' exonuclease; 5'-3' exonuclease, C-terminal SAM fold; 5'-3' exonuclease, N-terminal resolvase-like domain; DNA polymerase family A; TIGRFAM: DNA polymerase I.
  
  
 0.686
Dalk_1183
KEGG: dol:Dole_2445 DNA topoisomerase I; TIGRFAM: DNA topoisomerase I; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein; IMG reference gene:2503006885; PFAM: Toprim domain; Topoisomerase DNA binding C4 zinc finger; DNA topoisomerase; TIGRFAM: DNA topoisomerase I, bacterial.
  
  
 0.663
Dalk_3717
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: dol:Dole_1631 cobyrinic acid ac-diamide synthase; IMG reference gene:2503009461; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain.
     
 0.660
Dalk_3716
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: dol:Dole_1632 ParB-like partition protein; IMG reference gene:2503009460; PFAM: Helix-turn-helix; ParB-like nuclease domain; TIGRFAM: ParB-like partition proteins.
 
     0.657
Dalk_4012
TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: dol:Dole_1570 competence/damage-inducible protein CinA; IMG reference gene:2503009757; PFAM: Probable molybdopterin binding domain; Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA N-terminal domain; competence/damage-inducible protein CinA C-terminal domain; molybdenum cofactor synthesis domain.
 
   
 0.643
Dalk_0050
KEGG: dol:Dole_1705 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; IMG reference gene:2503005745; PFAM: Helicase conserved C-terminal domain; TRCF domain; CarD-like/TRCF domain; DEAD/DEAH box helicase; TIGRFAM: transcription-repair coupling factor (mfd).
 
   
 0.632
Dalk_0839
KEGG: dol:Dole_1665 exodeoxyribonuclease VII, large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type; IMG reference gene:2503006540; PFAM: Exonuclease VII, large subunit; OB-fold nucleic acid binding domain; TIGRFAM: exodeoxyribonuclease VII, large subunit.
 
   
 0.580
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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