STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_3728TIGRFAM: dethiobiotin synthase; KEGG: dol:Dole_0681 dethiobiotin synthase; IMG reference gene:2503009472; TIGRFAM: dethiobiotin synthase. (213 aa)    
Predicted Functional Partners:
Dalk_4030
PFAM: aminotransferase class-III; KEGG: bpl:BURPS1106A_A0436 hypothetical protein; IMG reference gene:2503009775; PFAM: Aminotransferase class-III; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate transaminase.
 
 0.997
Dalk_0763
KEGG: dol:Dole_0682 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; IMG reference gene:2503006464; PFAM: Radical SAM superfamily; Biotin and Thiamin Synthesis associated domain; TIGRFAM: biotin synthetase.
 
 
 0.995
Dalk_3734
KEGG: paa:Paes_0199 radical SAM domain protein; IMG reference gene:2503009478.
  
 
 0.970
Dalk_0407
TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: dol:Dole_2493 acetylornithine and succinylornithine aminotransferase; IMG reference gene:2503006104; PFAM: Aminotransferase class-III; TIGRFAM: acetylornithine and succinylornithine aminotransferases.
 
 0.890
Dalk_0376
TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; Helix-turn-helix type 11 domain protein; KEGG: dol:Dole_0391 biotin--acetyl-CoA-carboxylase ligase; IMG reference gene:2503006073; PFAM: HTH domain; Biotin protein ligase C terminal domain; Biotin/lipoate A/B protein ligase family; TIGRFAM: BirA biotin operon repressor domain; birA, biotin-[acetyl-CoA-carboxylase] ligase region.
  
  
 0.740
Dalk_3312
KEGG: dol:Dole_2079 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; IMG reference gene:2503009042; PFAM: RibD C-terminal domain; Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: riboflavin-specific deaminase C-terminal domain; riboflavin biosynthesis protein RibD.
     
 0.657
Dalk_0455
TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; KEGG: dol:Dole_1230 cobalamin 5'-phosphate synthase; IMG reference gene:2503006155; PFAM: Cobalamin-5-phosphate synthase; TIGRFAM: cobalamin 5'-phosphate synthase/cobalamin synthase.
   
  
 0.634
Dalk_3823
KEGG: dol:Dole_1163 stationary-phase survival protein SurE; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE; IMG reference gene:2503009567; PFAM: Survival protein SurE; TIGRFAM: 5'/3'-nucleotidase SurE.
    
 0.616
Dalk_0377
PFAM: BioY protein; KEGG: sfu:Sfum_1749 BioY protein; IMG reference gene:2503006074; PFAM: BioY family.
  
  
 0.609
Dalk_2946
TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX; KEGG: sfu:Sfum_2529 2'-5' RNA ligase; IMG reference gene:2503008672; PFAM: 2',5' RNA ligase family; TIGRFAM: 2'-5' RNA ligase.
  
  
 0.605
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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