STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_3772TIGRFAM: translation elongation factor P; PFAM: Elongation factor P/YeiP protein; Elongation factor KOW domain protein; Elongation factor P; KEGG: pca:Pcar_2489 translation elongation factor P; IMG reference gene:2503009516; PFAM: Elongation factor P, C-terminal; Elongation factor P (EF-P) KOW-like domain; Elongation factor P (EF-P) OB domain; TIGRFAM: translation elongation factor P. (187 aa)    
Predicted Functional Partners:
Dalk_1892
PFAM: ribosomal protein S13; KEGG: dol:Dole_0730 ribosomal protein S13; IMG reference gene:2503007604; PFAM: Ribosomal protein S13/S18; TIGRFAM: 30S ribosomal protein S13.
 
 
 0.996
Dalk_1899
TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: chy:CHY_2293 50S ribosomal protein L18; IMG reference gene:2503007611; PFAM: Ribosomal L18p/L5e family; TIGRFAM: ribosomal protein L18, bacterial type.
  
 
 0.996
Dalk_1906
PFAM: ribosomal protein S17; KEGG: tma:TM1491 30S ribosomal protein S17; IMG reference gene:2503007618; PFAM: Ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17.
  
 
 0.996
Dalk_1909
KEGG: dol:Dole_0714 ribosomal protein S3; TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; Ribosomal protein S3 domain; SMART: KH domain protein; IMG reference gene:2503007621; PFAM: KH domain; Ribosomal protein S3, C-terminal domain; Ribosomal protein S3, N-terminal domain; TIGRFAM: ribosomal protein S3, bacterial type.
  
 
 0.996
Dalk_1916
PFAM: ribosomal protein S10; KEGG: dol:Dole_0707 ribosomal protein S10; IMG reference gene:2503007628; PFAM: Ribosomal protein S10p/S20e; TIGRFAM: ribosomal protein S10, bacterial/organelle.
   
 
 0.996
Dalk_1918
Ribosomal protein S7; Binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; IMG reference gene:2503007630; PFAM: Ribosomal protein S7p/S5e; TIGRFAM: ribosomal protein S7, bacterial/organelle.
  
 
 0.996
Dalk_1919
Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; IMG reference gene:2503007631; PFAM: Ribosomal protein S12; TIGRFAM: ribosomal protein S12, bacterial/organelle.
  
 
 0.996
Dalk_2692
Ribosomal protein L13; In Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; IMG reference gene:2503008415; PFAM: Ribosomal protein L13; TIGRFAM: ribosomal protein L13, bacterial type.
 
 
 0.996
Dalk_3165
PFAM: ribosomal protein S2; KEGG: dol:Dole_0474 ribosomal protein S2; IMG reference gene:2503008894; PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type.
 
 
 0.996
Dalk_4350
KEGG: sfu:Sfum_3205 hypothetical protein; IMG reference gene:2503010098.
   
 0.996
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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