STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Dalk_3779Putative methylmalonyl-CoA racemase; TIGRFAM: methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dol:Dole_0080 glyoxalase/bleomycin resistance protein/dioxygenase; IMG reference gene:2503009523; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: methylmalonyl-CoA epimerase. (134 aa)    
Predicted Functional Partners:
Dalk_1724
Methylmalonyl-coA mutase, small subunit; PFAM: cobalamin B12-binding domain protein; KEGG: tpd:Teth39_0903 cobalamin B12-binding domain-containing protein; IMG reference gene:2503007435; PFAM: B12 binding domain; TIGRFAM: methylmalonyl-CoA mutase C-terminal domain.
  
 0.993
Dalk_4170
Methylmalonyl-coA mutase, small subunit; PFAM: cobalamin B12-binding domain protein; KEGG: sth:STH2465 methylmalonyl-CoA mutase C-terminal domain-containing protein; IMG reference gene:2503009916; PFAM: B12 binding domain; TIGRFAM: methylmalonyl-CoA mutase C-terminal domain.
  
 0.983
Dalk_0221
KEGG: bha:BH2955 methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein; IMG reference gene:2503005917; PFAM: Methylmalonyl-CoA mutase; B12 binding domain; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain; methylmalonyl-CoA mutase C-terminal domain.
  
 0.980
Dalk_1726
KEGG: pfu:PF1947 hypothetical protein; TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; SMART: AAA ATPase; IMG reference gene:2503007437; PFAM: ArgK protein; TIGRFAM: LAO/AO transport system ATPase.
  
 0.970
Dalk_3780
Propionyl-CoA carboxylase, beta subunit; PFAM: carboxyl transferase; KEGG: dol:Dole_0077 carboxyl transferase; IMG reference gene:2503009524; PFAM: Carboxyl transferase domain.
 
 
 0.956
Dalk_4171
Methylmalonyl-CoA mutase, large subunit; KEGG: ape:APE_1687 coenzyme B12-dependent mutase; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; IMG reference gene:2503009917; PFAM: Methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain.
 
  
 0.948
Dalk_0220
KEGG: ppd:Ppro_1285 methylmalonyl-CoA mutase, large subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; IMG reference gene:2503005916; PFAM: Methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain; methylmalonyl-CoA mutase, heterodimeric type, beta chain.
 
  
 0.947
Dalk_2754
KEGG: dol:Dole_2188 methylmalonyl-CoA mutase, large subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: ArgK protein; methylmalonyl-CoA mutase; cobalamin B12-binding domain protein; IMG reference gene:2503008477; PFAM: ArgK protein; Methylmalonyl-CoA mutase; B12 binding domain; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain; methylmalonyl-CoA mutase C-terminal domain.
  
 
 0.937
Dalk_1725
Methylmalonyl-CoA mutase, large subunit; KEGG: tte:TTE1217 methylmalonyl-CoA mutase N-terminal domain-containing protein; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; IMG reference gene:2503007436; PFAM: Methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain.
 
  
 0.936
Dalk_4169
LAO/AO transport system ATPase; KEGG: pho:PH0274 hypothetical protein; TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; SMART: AAA ATPase; IMG reference gene:2503009915; PFAM: ArgK protein; TIGRFAM: LAO/AO transport system ATPase.
  
 0.933
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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