STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_3828PFAM: regulatory protein TetR; KEGG: dol:Dole_0928 TetR family transcriptional regulator; IMG reference gene:2503009572; PFAM: Bacterial regulatory proteins, tetR family. (455 aa)    
Predicted Functional Partners:
Dalk_3827
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: lbf:LBF_0105 nucleoside-diphosphate-sugar epimerase; IMG reference gene:2503009571; PFAM: NAD dependent epimerase/dehydratase family.
       0.773
Dalk_1970
PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; KEGG: dol:Dole_2404 glucose-methanol-choline oxidoreductase; IMG reference gene:2503007687; PFAM: GMC oxidoreductase.
  
 
  0.522
Dalk_4891
PFAM: glucose-methanol-choline oxidoreductase; KEGG: dol:Dole_2404 glucose-methanol-choline oxidoreductase; IMG reference gene:2503010649; PFAM: GMC oxidoreductase.
  
 
  0.491
Dalk_2436
PFAM: regulatory protein TetR; KEGG: mul:MUL_0905 transcriptional regulator; IMG reference gene:2503008157; PFAM: Bacterial regulatory proteins, tetR family.
  
     0.490
Dalk_3826
KEGG: dvl:Dvul_1699 hypothetical protein; IMG reference gene:2503009570.
       0.473
Dalk_2470
PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; KEGG: dol:Dole_2404 glucose-methanol-choline oxidoreductase; IMG reference gene:2503008191; PFAM: GMC oxidoreductase.
  
 
  0.463
Dalk_3874
Transcriptional regulator, TetR family; PFAM: regulatory protein MerR; regulatory protein TetR; KEGG: dol:Dole_0557 TetR family transcriptional regulator; IMG reference gene:2503009618; PFAM: MerR family regulatory protein; Bacterial regulatory proteins, tetR family.
  
     0.454
Dalk_3840
PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; KEGG: dol:Dole_2404 glucose-methanol-choline oxidoreductase; IMG reference gene:2503009584; PFAM: GMC oxidoreductase.
  
 
  0.435
Dalk_3825
PFAM: CBS domain containing protein; KEGG: dol:Dole_0795 CBS domain-containing protein; IMG reference gene:2503009569; PFAM: CBS domain.
   
   0.410
Dalk_3774
KEGG: pth:PTH_2214 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; IMG reference gene:2503009518; PFAM: Pyruvate kinase, barrel domain; Pyruvate kinase, alpha/beta domain; TIGRFAM: pyruvate kinase.
    
 0.405
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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