STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_3896PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: abo:ABO_0844 pyruvate carboxylase subunit B; IMG reference gene:2503009640; PFAM: Biotin-requiring enzyme. (70 aa)    
Predicted Functional Partners:
Dalk_3782
Pyruvate carboxylase; PFAM: biotin/lipoyl attachment domain-containing protein; pyruvate carboxyltransferase; Conserved carboxylase region; KEGG: dol:Dole_0075 hypothetical protein; IMG reference gene:2503009526; PFAM: HMGL-like; Conserved carboxylase domain; Biotin-requiring enzyme.
 
0.996
Dalk_0538
PFAM: carboxyl transferase; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: rpd:RPD_0602 carbamoyl-phosphate synthase L chain, ATP-binding; IMG reference gene:2503006238; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Carboxyl transferase domain; Biotin carboxylase C-terminal domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; Biotin-requiring enzyme.
 
0.993
Dalk_2549
Propionyl-CoA carboxylase, biotin-binding subunit; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: mxa:MXAN_5768 acetyl-CoA carboxylase, biotin carboxyl carrier protein; IMG reference gene:2503008270; PFAM: Biotin-requiring enzyme.
  
 0.967
Dalk_2659
Propionyl-CoA carboxylase, biotin-binding subunit; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: mxa:MXAN_5768 acetyl-CoA carboxylase, biotin carboxyl carrier protein; IMG reference gene:2503008381; PFAM: Biotin-requiring enzyme.
  
 0.967
Dalk_3780
Propionyl-CoA carboxylase, beta subunit; PFAM: carboxyl transferase; KEGG: dol:Dole_0077 carboxyl transferase; IMG reference gene:2503009524; PFAM: Carboxyl transferase domain.
 
 0.966
Dalk_0376
TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; Helix-turn-helix type 11 domain protein; KEGG: dol:Dole_0391 biotin--acetyl-CoA-carboxylase ligase; IMG reference gene:2503006073; PFAM: HTH domain; Biotin protein ligase C terminal domain; Biotin/lipoate A/B protein ligase family; TIGRFAM: BirA biotin operon repressor domain; birA, biotin-[acetyl-CoA-carboxylase] ligase region.
 
  
 0.961
Dalk_1238
TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: dol:Dole_2222 DNA-directed RNA polymerase, omega subunit; IMG reference gene:2503006941; PFAM: RNA polymerase Rpb6; TIGRFAM: DNA-directed RNA polymerase, omega subunit.
   
  0.961
Dalk_1740
PFAM: carboxyl transferase; KEGG: tte:TTE1220 acetyl-CoA carboxylase alpha subunit; IMG reference gene:2503007451; PFAM: Carboxyl transferase domain.
  
 0.961
Dalk_2022
PFAM: carboxyl transferase; KEGG: bbr:BB2690 putative carboxyl transferase; IMG reference gene:2503007739; PFAM: Carboxyl transferase domain.
  
 0.961
Dalk_2547
Propionyl-CoA carboxylase, beta subunit; PFAM: carboxyl transferase; KEGG: pab:PAB1769 methylmalonyl-CoA decarboxylase, subunit alpha; IMG reference gene:2503008268; PFAM: Carboxyl transferase domain.
  
 0.961
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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