STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_3977KEGG: swi:Swit_4457 hypothetical protein; IMG reference gene:2503009722. (537 aa)    
Predicted Functional Partners:
Dalk_3978
Hypothetical protein Dalk_3978; IMG reference gene:2503009723.
       0.773
Dalk_3979
PFAM: GCN5-related N-acetyltransferase; IMG reference gene:2503009724; PFAM: Acetyltransferase (GNAT) family.
       0.773
Dalk_3980
Hypothetical protein Dalk_3980; IMG reference gene:2503009725.
       0.773
Dalk_3976
PFAM: Tail Collar domain protein; KEGG: rso:RSc1692 hypothetical protein; IMG reference gene:2503009721; PFAM: Phage Tail Collar Domain.
       0.768
Dalk_3981
Hypothetical protein Dalk_3981; IMG reference gene:2503009726.
       0.714
Dalk_3982
KEGG: sfu:Sfum_1872 hypothetical protein; IMG reference gene:2503009727; PFAM: Protein of unknown function (DUF3154).
       0.689
Dalk_3975
Hypothetical protein Dalk_3975; IMG reference gene:2503009720.
       0.677
Dalk_3983
Hypothetical protein Dalk_3983; IMG reference gene:2503009728.
       0.598
Dalk_3974
Hypothetical protein Dalk_3974; IMG reference gene:2503009719.
       0.596
Dalk_3973
Hypothetical protein Dalk_3973; IMG reference gene:2503009718.
       0.468
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.