STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_4032KEGG: dps:DP0988 hypothetical protein; IMG reference gene:2503009777; PFAM: Iron-sulphur cluster biosynthesis. (110 aa)    
Predicted Functional Partners:
Dalk_2648
TIGRFAM: Fe-S cluster assembly protein NifU; PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: sfu:Sfum_2684 Fe-S cluster assembly protein NifU; IMG reference gene:2503008370; PFAM: NifU-like N terminal domain; BFD-like [2Fe-2S] binding domain; NifU-like domain; TIGRFAM: Fe-S cluster assembly protein NifU.
  
 
 0.979
Dalk_5213
TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: pca:Pcar_2692 peptide chain release factor 1; IMG reference gene:2503010972; PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 1.
     
 0.797
Dalk_3072
PFAM: SufBD protein; KEGG: sfu:Sfum_0163 SufBD protein; IMG reference gene:2503008799; PFAM: Uncharacterized protein family (UPF0051).
  
 
 0.747
Dalk_0766
KEGG: bph:Bphy_5540 putative DnaK-related protein (molecular chaperone); IMG reference gene:2503006467; PFAM: Hsp70 protein.
  
 0.736
Dalk_0767
KEGG: sfu:Sfum_0343 DnaK-related protein; IMG reference gene:2503006468; PFAM: DNA-K related protein; Hsp70 protein.
  
 0.736
Dalk_1138
2-alkenal reductase; PFAM: Heat shock protein 70; KEGG: cac:CAC0472 HSP70/DnaK family protein; IMG reference gene:2503006840; PFAM: Hsp70 protein.
  
 0.736
Dalk_3615
KEGG: dol:Dole_0070 chaperone protein DnaK; TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70; IMG reference gene:2503009347; PFAM: Hsp70 protein; TIGRFAM: chaperone protein DnaK.
  
 0.736
Dalk_4977
KEGG: nth:Nther_2354 hypothetical protein; IMG reference gene:2503010736.
  
 0.736
Dalk_3073
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1445 ATPase; IMG reference gene:2503008800; PFAM: ABC transporter; TIGRFAM: FeS assembly ATPase SufC.
  
 
 0.707
Dalk_3015
PFAM: DSBA oxidoreductase; KEGG: glo:Glov_3532 DsbA oxidoreductase; IMG reference gene:2503008742; PFAM: DSBA-like thioredoxin domain.
   
 
  0.701
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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