STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_4049PFAM: protein of unknown function DUF35; KEGG: afu:AF0965 hypothetical protein; IMG reference gene:2503009794; PFAM: Rubredoxin-like zinc ribbon domain (DUF35_N); DUF35 OB-fold domain. (159 aa)    
Predicted Functional Partners:
Dalk_4048
Propanoyl-CoA C-acyltransferase; KEGG: afu:AF0202 3-ketoacyl-CoA thiolase (AcaB-6); IMG reference gene:2503009793.
 
 0.979
Dalk_4047
Propanoyl-CoA C-acyltransferase; KEGG: reh:H16_A0867 acetyl-CoA acetyltransferase; IMG reference gene:2503009792.
 
 0.972
Dalk_3191
PFAM: short-chain dehydrogenase/reductase SDR; protein of unknown function DUF35; Sterol-binding domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KR domain protein; KEGG: dol:Dole_1550 short-chain dehydrogenase/reductase SDR; IMG reference gene:2503008920; PFAM: Rubredoxin-like zinc ribbon domain (DUF35_N); 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; DUF35 OB-fold domain; short chain dehydrogenase; SCP-2 sterol transfer family.
 
 0.963
Dalk_3911
PFAM: protein of unknown function DUF35; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: dol:Dole_1550 short-chain dehydrogenase/reductase SDR; IMG reference gene:2503009655; PFAM: Rubredoxin-like zinc ribbon domain (DUF35_N); 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal.
 
 0.929
Dalk_3344
Propanoyl-CoA C-acyltransferase; KEGG: reh:H16_A0868 acetyl-CoA acetyltransferase; IMG reference gene:2503009074.
 
 0.928
Dalk_3345
KEGG: reh:H16_A0867 acetyl-CoA acetyltransferase; IMG reference gene:2503009075.
 
 0.908
Dalk_4045
KEGG: gme:Gmet_2268 thiolase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; IMG reference gene:2503009790; PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases.
  
 0.883
Dalk_4144
Pyruvate-ferredoxin oxidoreductase, alpha subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; IMG reference gene:2503009890; PFAM: Domain of unknown function; domain; Pyruvate ferredoxin/flavodoxin oxidoreductase; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: pyruvate:ferredoxin (flavodoxin [...]
    
  0.834
Dalk_3190
KEGG: dol:Dole_1551 acetyl-CoA acetyltransferase; IMG reference gene:2503008919; PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain.
 
 0.795
Dalk_3387
KEGG: dol:Dole_1601 acetyl-CoA acetyltransferase-like protein; IMG reference gene:2503009119; PFAM: Thiolase, C-terminal domain.
 
 0.794
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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