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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_4100PFAM: protein of unknown function DUF52; KEGG: dol:Dole_0299 hypothetical protein; IMG reference gene:2503009845; PFAM: Memo-like protein. (282 aa)    
Predicted Functional Partners:
Dalk_1495
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gsu:GSU1728 hypothetical protein; IMG reference gene:2503007205; PFAM: Radical SAM superfamily.
 
     0.781
Dalk_3955
PFAM: Radical SAM domain protein; KEGG: dol:Dole_2431 radical SAM domain-containing protein; IMG reference gene:2503009700; PFAM: Radical SAM superfamily.
 
     0.777
Dalk_3956
PFAM: AMMECR1 domain protein; protein of unknown function DUF52; KEGG: mgm:Mmc1_2152 protein of unknown function DUF52; IMG reference gene:2503009701; PFAM: Memo-like protein; AMMECR1; TIGRFAM: uncharacterized protein, PH0010 family.
 
   
0.692
Dalk_4099
TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein; KEGG: dol:Dole_2134 small GTP-binding protein; IMG reference gene:2503009844; PFAM: GTPase of unknown function; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein domain.
       0.511
Dalk_4101
KEGG: hau:Haur_2253 hypothetical protein; IMG reference gene:2503009846.
       0.448
Dalk_4097
PFAM: magnesium chelatase ChlI subunit; AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: sat:SYN_01990 recombination factor protein RarA; IMG reference gene:2503009842; PFAM: MgsA AAA+ ATPase C terminal; ATPase family associated with various cellular activities (AAA).
       0.442
Dalk_3098
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dol:Dole_1918 short chain dehydrogenase; IMG reference gene:2503008827; PFAM: short chain dehydrogenase.
  
  
  0.439
Dalk_5216
PFAM: alpha/beta hydrolase fold; KEGG: bcm:Bcenmc03_3803 alpha/beta hydrolase fold; IMG reference gene:2503010975; PFAM: alpha/beta hydrolase fold.
  
 
  0.432
Dalk_1572
3-Oxoacyl (acyl-carrier protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dol:Dole_2622 short-chain dehydrogenase/reductase SDR; IMG reference gene:2503007282; PFAM: short chain dehydrogenase.
  
  
  0.431
Dalk_3754
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: dol:Dole_1918 short chain dehydrogenase; IMG reference gene:2503009498; PFAM: short chain dehydrogenase.
  
  
  0.430
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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