STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_4120PFAM: transposase IS4 family protein; KEGG: pap:PSPA7_0119 transposase DDE domain-containing protein; IMG reference gene:2503009866; PFAM: Transposase DDE domain. (422 aa)    
Predicted Functional Partners:
Dalk_0531
KEGG: pmb:A9601_17311 hypothetical protein; IMG reference gene:2503006231.
  
     0.527
Dalk_4799
TIGRFAM: DGQHR domain protein; DNA sulfur modification protein DndB; KEGG: sma:SAV2932 hypothetical protein; IMG reference gene:2503010556; TIGRFAM: DGQHR domain; DNA sulfur modification protein DndB.
  
     0.455
Dalk_4797
TIGRFAM: DNA sulfur modification protein DndD; KEGG: sma:SAV2930 hypothetical protein; IMG reference gene:2503010554; TIGRFAM: DNA sulfur modification protein DndD.
  
     0.446
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.