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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_4160PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: nth:Nther_2161 3-hydroxyisobutyrate dehydrogenase; IMG reference gene:2503009906; PFAM: NAD binding domain of 6-phosphogluconate dehydrogenase. (288 aa)    
Predicted Functional Partners:
Dalk_4144
Pyruvate-ferredoxin oxidoreductase, alpha subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; IMG reference gene:2503009890; PFAM: Domain of unknown function; domain; Pyruvate ferredoxin/flavodoxin oxidoreductase; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: pyruvate:ferredoxin (flavodoxin [...]
    
  0.854
Dalk_3943
PFAM: Proline dehydrogenase; Aldehyde Dehydrogenase; KEGG: tdn:Suden_1327 delta-1-pyrroline-5-carboxylate dehydrogenase / L-proline dehydrogenase; IMG reference gene:2503009687; PFAM: Proline dehydrogenase; Aldehyde dehydrogenase family.
  
 
 0.835
Dalk_3586
PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase; KEGG: gka:GK0199 aldehyde dehydrogenase; IMG reference gene:2503009318; PFAM: Aldehyde dehydrogenase family; Iron-containing alcohol dehydrogenase.
  
 
 0.829
Dalk_3782
Pyruvate carboxylase; PFAM: biotin/lipoyl attachment domain-containing protein; pyruvate carboxyltransferase; Conserved carboxylase region; KEGG: dol:Dole_0075 hypothetical protein; IMG reference gene:2503009526; PFAM: HMGL-like; Conserved carboxylase domain; Biotin-requiring enzyme.
    
  0.820
Dalk_3659
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: dol:Dole_0155 3-hydroxyacyl-CoA dehydrogenase NAD-binding; IMG reference gene:2503009403; PFAM: Enoyl-CoA hydratase/isomerase family; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain.
  
 
 0.785
Dalk_3035
TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: cau:Caur_0026 alkylhydroperoxidase; IMG reference gene:2503008762; PFAM: Carboxymuconolactone decarboxylase family; TIGRFAM: alkylhydroperoxidase AhpD family core domain.
  
 
 0.778
Dalk_4415
PFAM: Carboxymuconolactone decarboxylase; KEGG: mba:Mbar_A0768 4-carboxymuconolactone decarboxylase; IMG reference gene:2503010163; PFAM: Carboxymuconolactone decarboxylase family.
  
 
 0.778
Dalk_4159
PFAM: beta-lactamase domain protein; KEGG: afu:AF1509 hypothetical protein; IMG reference gene:2503009905; PFAM: Metallo-beta-lactamase superfamily.
  
    0.754
Dalk_4382
PFAM: GCN5-related N-acetyltransferase; acetyl-CoA hydrolase/transferase; KEGG: syn:slr1888 hypothetical protein; IMG reference gene:2503010130; PFAM: Acetyl-CoA hydrolase/transferase N-terminal domain; Acetyltransferase (GNAT) family.
    
  0.738
Dalk_4154
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bra:BRADO4966 putative NADPH quinone oxidoreductase; IMG reference gene:2503009900; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase.
 
  
 0.725
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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