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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_4176PFAM: integrase family protein; KEGG: dar:Daro_1037 phage integrase; IMG reference gene:2503009922; PFAM: Phage integrase family. (372 aa)    
Predicted Functional Partners:
Dalk_2107
PFAM: integrase family protein; KEGG: nth:Nther_2955 integrase family protein; IMG reference gene:2503007827; PFAM: Phage integrase family.
   
 0.768
Dalk_2810
PFAM: integrase family protein; KEGG: afw:Anae109_3980 phage integrase family protein; IMG reference gene:2503008533; PFAM: Phage integrase family.
 
   
 0.756
Dalk_5226
PFAM: integrase family protein; KEGG: afw:Anae109_3980 phage integrase family protein; IMG reference gene:2503010986; PFAM: Phage integrase family.
  
     0.750
Dalk_3151
Holliday junction DNA helicase RuvB; Promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; IMG reference gene:2503008880; PFAM: Holliday junction DNA helicase ruvB C-terminus; Holliday junction DNA helicase ruvB N-terminus; TIGRFAM: Holliday junction DNA helicase, RuvB subunit.
    
 0.731
Dalk_3467
TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: dol:Dole_0632 excinuclease ABC, A subunit; IMG reference gene:2503009199; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit.
    
 0.731
Dalk_0770
KEGG: gur:Gura_0291 excinuclease ABC subunit B; TIGRFAM: excinuclease ABC, B subunit; PFAM: helicase domain protein; UvrB/UvrC protein; type III restriction protein res subunit; SMART: DEAD-like helicases; IMG reference gene:2503006471; PFAM: Helicase conserved C-terminal domain; UvrB/uvrC motif; Type III restriction enzyme, res subunit; Ultra-violet resistance protein B; TIGRFAM: excinuclease ABC, B subunit.
     
 0.723
Dalk_3150
PFAM: DNA recombination protein RuvA domain I; KEGG: dol:Dole_2206 DNA recombination protein RuvA; IMG reference gene:2503008879; PFAM: RuvA N terminal domain; TIGRFAM: Holliday junction DNA helicase, RuvA subunit.
     
 0.723
Dalk_1352
PFAM: integrase family protein; KEGG: mta:Moth_1796 phage integrase; IMG reference gene:2503007056; PFAM: Phage integrase family.
  
     0.715
Dalk_4144
Pyruvate-ferredoxin oxidoreductase, alpha subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; IMG reference gene:2503009890; PFAM: Domain of unknown function; domain; Pyruvate ferredoxin/flavodoxin oxidoreductase; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: pyruvate:ferredoxin (flavodoxin [...]
    
  0.701
Dalk_3149
PFAM: Crossover junction endodeoxyribonuclease RuvC; KEGG: dol:Dole_2207 crossover junction endodeoxyribonuclease; IMG reference gene:2503008878; PFAM: Crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC.
     
 0.697
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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