STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_4193KEGG: cyt:cce_2294 hypothetical protein; IMG reference gene:2503009940. (574 aa)    
Predicted Functional Partners:
Dalk_4194
PFAM: transposase IS4 family protein; KEGG: gur:Gura_2804 transposase, IS4 family protein; IMG reference gene:2503009941; PFAM: Transposase DDE domain.
       0.548
Dalk_4195
Protein tyrosine/serine phosphatase; PFAM: putative tyrosine phosphatase; KEGG: pca:Pcar_2841 hypothetical protein; IMG reference gene:2503009942; PFAM: Tyrosine phosphatase family.
       0.499
Dalk_4196
Putative corrinoid enzyme (methylcobamide:CoM methyltransferase-related protein); PFAM: Uroporphyrinogen decarboxylase (URO-D); KEGG: dol:Dole_0062 uroporphyrinogen decarboxylase; IMG reference gene:2503009943; PFAM: Uroporphyrinogen decarboxylase (URO-D).
       0.465
Dalk_4197
PFAM: cobalamin B12-binding domain protein; KEGG: dol:Dole_0061 cobalamin B12-binding domain-containing protein; IMG reference gene:2503009944; PFAM: B12 binding domain.
       0.443
Dalk_4192
KEGG: sfu:Sfum_2277 hypothetical protein; IMG reference gene:2503009939.
       0.427
Dalk_4198
PFAM: Vitamin B12 dependent methionine synthase activation region; KEGG: dol:Dole_2962 vitamin B12 dependent methionine synthase activation region; IMG reference gene:2503009945; PFAM: Vitamin B12 dependent methionine synthase, activation domain.
       0.410
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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