STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_4217TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: amu:Amuc_0556 regulatory protein, FmdB family; IMG reference gene:2503009964; PFAM: Zinc ribbon domain; TIGRFAM: putative regulatory protein, FmdB family. (104 aa)    
Predicted Functional Partners:
Dalk_4218
Adenylate/guanylate cyclase with GAF sensor(s); PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; GAF domain protein; KEGG: pth:PTH_1596 hypothetical protein; IMG reference gene:2503009965; PFAM: Adenylate and Guanylate cyclase catalytic domain; GAF domain.
       0.479
Dalk_4219
PFAM: protein of unknown function DUF6 transmembrane; KEGG: sat:SYN_00035 DMT family permease; IMG reference gene:2503009966; PFAM: EamA-like transporter family.
       0.473
Dalk_4216
KEGG: hypothetical protein; IMG reference gene:2503009963.
       0.428
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.