STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_4219PFAM: protein of unknown function DUF6 transmembrane; KEGG: sat:SYN_00035 DMT family permease; IMG reference gene:2503009966; PFAM: EamA-like transporter family. (289 aa)    
Predicted Functional Partners:
Dalk_4218
Adenylate/guanylate cyclase with GAF sensor(s); PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; GAF domain protein; KEGG: pth:PTH_1596 hypothetical protein; IMG reference gene:2503009965; PFAM: Adenylate and Guanylate cyclase catalytic domain; GAF domain.
       0.762
Dalk_3161
KEGG: dol:Dole_0478 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; IMG reference gene:2503008890; PFAM: Putative undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase.
    
 0.747
Dalk_2048
PFAM: ABC-2 type transporter; KEGG: cps:CPS_1067 putative ABC transporter, permease protein; IMG reference gene:2503007765; PFAM: ABC-2 type transporter.
  
  
  0.724
Dalk_0379
PFAM: cobalt transport protein; KEGG: mac:MA4343 cobalt transport family protein; IMG reference gene:2503006076; PFAM: Cobalt transport protein.
  
 
  0.709
Dalk_2005
TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: dol:Dole_2020 cobalt ABC transporter, inner membrane subunit CbiQ; IMG reference gene:2503007722; PFAM: Cobalt transport protein; TIGRFAM: cobalt ABC transporter, permease protein CbiQ.
  
 
  0.709
Dalk_4068
PFAM: cobalt transport protein; KEGG: mma:MM_1995 cobalt transport protein; IMG reference gene:2503009813; PFAM: Cobalt transport protein.
  
 
  0.709
Dalk_2788
Protein of unknown function DUF140; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; protein of unknown function DUF140; KEGG: dol:Dole_1017 hypothetical protein; IMG reference gene:2503008511; PFAM: Domain of unknown function DUF140; STAS domain; TIGRFAM: conserved hypothetical integral membrane protein.
    
  0.694
Dalk_4431
PFAM: protein of unknown function DUF140; KEGG: dvl:Dvul_1816 hypothetical protein; IMG reference gene:2503010182; PFAM: Domain of unknown function DUF140; TIGRFAM: conserved hypothetical integral membrane protein.
    
  0.693
Dalk_3535
PFAM: ABC-2 type transporter; KEGG: ppd:Ppro_1264 ABC-2 type transporter; IMG reference gene:2503009267; PFAM: ABC-2 type transporter; TIGRFAM: ABC-2 type transporter, NodJ family.
  
  
  0.692
Dalk_1256
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_2307 amino acid ABC transporter permease; IMG reference gene:2503006959; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family.
  
 
  0.672
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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