STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_4232TIGRFAM: conserved repeat domain protein; PFAM: protein of unknown function DUF11; KEGG: pna:Pnap_0406 conserved repeat domain; IMG reference gene:2503009979; PFAM: Domain of unknown function DUF11; TIGRFAM: conserved repeat domain. (1994 aa)    
Predicted Functional Partners:
Dalk_4230
TIGRFAM: conserved repeat domain protein; KEGG: dge:Dgeo_2431 hypothetical protein; IMG reference gene:2503009977; PFAM: Domain of unknown function DUF11; TIGRFAM: conserved repeat domain.
 
     0.850
Dalk_1092
KEGG: swd:Swoo_2503 hypothetical protein; IMG reference gene:2503006793.
  
 0.827
Dalk_2500
PFAM: peptidase C11 clostripain; SMART: Fibronectin type III domain protein; KEGG: rca:Rcas_2277 peptidase C11 clostripain; IMG reference gene:2503008221; PFAM: Clostripain family.
  
 0.827
Dalk_2501
PFAM: peptidase C11 clostripain; SMART: Fibronectin type III domain protein; KEGG: rca:Rcas_2277 peptidase C11 clostripain; IMG reference gene:2503008222; PFAM: Clostripain family.
  
 0.827
Dalk_2502
PFAM: peptidase C11 clostripain; KEGG: rca:Rcas_2277 peptidase C11 clostripain; IMG reference gene:2503008223; PFAM: Clostripain family.
  
 0.827
Dalk_2289
PFAM: PKD domain containing protein; NHL repeat containing protein; SMART: LamG domain protein jellyroll fold domain protein; KEGG: mac:MA4315 cell surface protein; IMG reference gene:2503008009; PFAM: NHL repeat; PKD domain.
   
 0.805
Dalk_0310
OmpA/MotB domain protein; PFAM: von Willebrand factor type A; OmpA/MotB domain protein; KEGG: sat:SYN_00198 outer membrane porin protein; IMG reference gene:2503006007; PFAM: von Willebrand factor type A domain; OmpA family.
 
 
 0.794
Dalk_1041
PFAM: OmpA/MotB domain protein; KEGG: dol:Dole_1995 OmpA/MotB domain-containing protein; IMG reference gene:2503006742; PFAM: OmpA family.
 
 
 0.792
Dalk_4630
KEGG: lil:LA0536 hypothetical protein; IMG reference gene:2503010386; PFAM: Protein of unknown function (DUF2804).
  
  
 0.784
Dalk_1387
KEGG: dol:Dole_3252 hypothetical protein; IMG reference gene:2503007092; TIGRFAM: conserved repeat domain.
 
     0.776
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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