STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_4250KEGG: dol:Dole_1996 hypothetical protein; IMG reference gene:2503009998. (139 aa)    
Predicted Functional Partners:
Dalk_1428
TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfu:Sfum_2887 phosphate ABC transporter, inner membrane subunit PstC; IMG reference gene:2503007133; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease protein PstC; phosphate ABC transporter, permease protein PstA.
  
 
 0.952
Dalk_1429
TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfu:Sfum_2888 phosphate ABC transporter, inner membrane subunit PstA; IMG reference gene:2503007134; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease protein PstA.
 
 
 0.947
Dalk_1430
Phosphate ABC transporter, ATPase subunit; KEGG: dde:Dde_2386 phosphate ABC transporter permease; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; IMG reference gene:2503007135; PFAM: ABC transporter; TIGRFAM: phosphate ABC transporter, ATP-binding protein.
  
 
 0.937
Dalk_2788
Protein of unknown function DUF140; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; protein of unknown function DUF140; KEGG: dol:Dole_1017 hypothetical protein; IMG reference gene:2503008511; PFAM: Domain of unknown function DUF140; STAS domain; TIGRFAM: conserved hypothetical integral membrane protein.
    
  0.814
Dalk_3661
KEGG: sfu:Sfum_1396 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; IMG reference gene:2503009405; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; NMT1/THI5 like; PAS fold; TIGRFAM: PAS domain S-box.
    
 0.796
Dalk_1498
Histidine kinase; PFAM: extracellular solute-binding protein family 3; response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gsu:GSU0842 sensory box histidine kinase/response regulator; IMG reference gene:2503007208; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; Bacterial extracellular solute-binding proteins, family 3.
    
 0.792
Dalk_1862
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pdi:BDI_0492 putative molybdenum transport ATP-binding protein; IMG reference gene:2503007574; PFAM: ABC transporter.
  
  
  0.786
Dalk_0978
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: xca:xccb100_0599 anti-anti-sigma factor; IMG reference gene:2503006679; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor.
  
  
  0.785
Dalk_2478
PFAM: Forkhead-associated protein; KEGG: sfu:Sfum_3436 FHA domain containing protein; IMG reference gene:2503008199; PFAM: FHA domain.
  
  
  0.784
Dalk_0870
PFAM: binding-protein-dependent transport systems inner membrane component; ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: mac:MA2480 peptide ABC transporter, permease protein; IMG reference gene:2503006571; PFAM: ABC transporter; Binding-protein-dependent transport system inner membrane component; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain.
    
 0.781
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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