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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_4255PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sus:Acid_4736 TPR repeat-containing protein; IMG reference gene:2503010003; PFAM: Tetratricopeptide repeat. (538 aa)    
Predicted Functional Partners:
Dalk_1766
KEGG: dol:Dole_2417 TPR repeat-containing protein; IMG reference gene:2503007477.
 
  
  0.929
Dalk_2944
KEGG: dol:Dole_1268 alanyl-tRNA synthetase; TIGRFAM: alanyl-tRNA synthetase; PFAM: alanyl-tRNA synthetase class IIc; phosphoesterase DHHA1; Threonyl/alanyl tRNA synthetase SAD; IMG reference gene:2503008670; PFAM: DHHA1 domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetases class II (A); TIGRFAM: alanine--tRNA ligase.
   
 0.914
Dalk_1967
PFAM: TPR repeat-containing protein; Sporulation domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: apj:APJL_0347 putative lipoprotein; IMG reference gene:2503007684; PFAM: Tetratricopeptide repeat; Sporulation related domain.
 
  0.904
Dalk_4888
O-antigen polymerase; PFAM: TPR repeat-containing protein; O-antigen polymerase; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dol:Dole_2418 TPR repeat-containing protein; IMG reference gene:2503010646; PFAM: Tetratricopeptide repeat; O-Antigen ligase.
 
  
  0.902
Dalk_4399
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dol:Dole_2747 TPR repeat-containing protein; IMG reference gene:2503010147; PFAM: Tetratricopeptide repeat.
  
  0.893
Dalk_0805
PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: chu:CHU_2338 S1 RNA-binding domain-containing protein; IMG reference gene:2503006506; PFAM: Tex-like protein N-terminal domain; S1 RNA binding domain.
    
 0.890
Dalk_0766
KEGG: bph:Bphy_5540 putative DnaK-related protein (molecular chaperone); IMG reference gene:2503006467; PFAM: Hsp70 protein.
 
 0.867
Dalk_0767
KEGG: sfu:Sfum_0343 DnaK-related protein; IMG reference gene:2503006468; PFAM: DNA-K related protein; Hsp70 protein.
 
 0.867
Dalk_1584
PFAM: alpha-2-macroglobulin; alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; KEGG: amu:Amuc_1565 alpha-2-macroglobulin domain protein; IMG reference gene:2503007294; PFAM: Alpha-macro-globulin thiol-ester bond-forming region; Alpha-2-macroglobulin family; MG2 domain; Alpha-2-macroglobulin family N-terminal region.
  
  
  0.858
Dalk_0133
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sat:SYN_00192 TPR repeat-containing protein; IMG reference gene:2503005828; PFAM: Tetratricopeptide repeat.
 
 0.852
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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