Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Dalk_4255PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sus:Acid_4736 TPR repeat-containing protein; IMG reference gene:2503010003; PFAM: Tetratricopeptide repeat. (538 aa)    
Predicted Functional Partners:
Dalk_1766
KEGG: dol:Dole_2417 TPR repeat-containing protein; IMG reference gene:2503007477.
  
  
  0.863
Dalk_4888
O-antigen polymerase; PFAM: TPR repeat-containing protein; O-antigen polymerase; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dol:Dole_2418 TPR repeat-containing protein; IMG reference gene:2503010646; PFAM: Tetratricopeptide repeat; O-Antigen ligase.
 
  
  0.810
Dalk_1967
PFAM: TPR repeat-containing protein; Sporulation domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: apj:APJL_0347 putative lipoprotein; IMG reference gene:2503007684; PFAM: Tetratricopeptide repeat; Sporulation related domain.
  
  0.807
Dalk_4399
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dol:Dole_2747 TPR repeat-containing protein; IMG reference gene:2503010147; PFAM: Tetratricopeptide repeat.
  
  
  0.793
Dalk_1951
Putative signal transduction protein with EFhand domain; SMART: Calcium-binding EF-hand-containing protein; KEGG: rle:pRL120065 putative symbiosis-related calsymin; IMG reference gene:2503007668.
    
 0.785
Dalk_2944
KEGG: dol:Dole_1268 alanyl-tRNA synthetase; TIGRFAM: alanyl-tRNA synthetase; PFAM: alanyl-tRNA synthetase class IIc; phosphoesterase DHHA1; Threonyl/alanyl tRNA synthetase SAD; IMG reference gene:2503008670; PFAM: DHHA1 domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetases class II (A); TIGRFAM: alanine--tRNA ligase.
   
 0.783
Dalk_4256
PFAM: YD repeat-containing protein; KEGG: csc:Csac_1174 YD repeat-containing protein; IMG reference gene:2503010004; PFAM: RHS Repeat; TIGRFAM: YD repeat (two copies).
  
    0.777
Dalk_4028
SMART: SET-related domain protein; KEGG: bte:BTH_II2089 hypothetical protein; IMG reference gene:2503009773.
    
 0.776
Dalk_1747
Hpt sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: cya:CYA_2836 sensory box histidine kinase/response regulator; IMG reference gene:2503007458; PFAM: HAMP domain; Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; Hpt domain.
    
 0.742
Dalk_0873
KEGG: hch:HCH_00809 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; IMG reference gene:2503006574; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; Hpt domain; PAS fold; TIGRFAM: PAS domain S-box.
    
 0.740
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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