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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_4263PFAM: Gp37Gp68 family protein; KEGG: rca:Rcas_0327 Gp37Gp68 family protein; IMG reference gene:2503010011; PFAM: Phage protein Gp37/Gp68. (240 aa)    
Predicted Functional Partners:
Dalk_4264
KEGG: chu:CHU_3679 hypothetical protein; IMG reference gene:2503010012.
 
     0.948
Dalk_4265
PFAM: branched-chain amino acid transport; KEGG: sfu:Sfum_0195 branched-chain amino acid transport; IMG reference gene:2503010013; PFAM: Branched-chain amino acid transport protein (AzlD).
       0.470
Dalk_4266
PFAM: AzlC family protein; KEGG: gsu:GSU0768 AzlC family protein; IMG reference gene:2503010014; PFAM: AzlC protein; TIGRFAM: 4-azaleucine resistance probable transporter AzlC.
       0.470
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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