STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_4331PFAM: protein of unknown function DUF1058; SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: sde:Sde_1715 SH3 domain protein-like; IMG reference gene:2503010079; PFAM: Bacterial SH3 domain. (217 aa)    
Predicted Functional Partners:
Dalk_4332
KEGG: dol:Dole_1490 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; IMG reference gene:2503010080; PFAM: domain; FAD binding domain; TIGRFAM: L-aspartate oxidase.
    
  0.806
Dalk_0117
GMP synthase, large subunit; Contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; IMG reference gene:2503005812; PFAM: Glutamine amidotransferase class-I; GMP synthase C terminal domain; NAD synthase; TIGRFAM: GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit; GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit.
    
  0.769
Dalk_4012
TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: dol:Dole_1570 competence/damage-inducible protein CinA; IMG reference gene:2503009757; PFAM: Probable molybdopterin binding domain; Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA N-terminal domain; competence/damage-inducible protein CinA C-terminal domain; molybdenum cofactor synthesis domain.
    
  0.753
Dalk_4333
Spermidine synthase-like protein; KEGG: bbr:BB2737 hypothetical protein; IMG reference gene:2503010081.
       0.584
Dalk_4334
KEGG: pfl:PFL_2841 spermine/spermidine synthase family protein; IMG reference gene:2503010082; PFAM: Spermine/spermidine synthase.
       0.584
Dalk_5147
PFAM: Peptidoglycan-binding domain 1 protein; SMART: AAA ATPase; KEGG: saz:Sama_0835 peptidoglycan binding domain-containing protein; IMG reference gene:2503010906; PFAM: Putative peptidoglycan binding domain; CobW/HypB/UreG, nucleotide-binding domain.
 
  
 0.579
Dalk_4330
PFAM: protein of unknown function DUF1178; KEGG: sat:SYN_00076 putative cytoplasmic protein; IMG reference gene:2503010078; PFAM: Protein of unknown function (DUF1178).
       0.495
Dalk_3331
KEGG: dol:Dole_2568 orotidine 5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; IMG reference gene:2503009061; PFAM: Orotidine 5'-phosphate decarboxylase / HUMPS family; TIGRFAM: orotidine 5'-phosphate decarboxylase, subfamily 1.
    
  0.490
Dalk_5040
TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: dol:Dole_0374 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase; IMG reference gene:2503010799; PFAM: Ham1 family; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family.
    
  0.484
Dalk_1929
PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; KEGG: dol:Dole_0694 lytic transglycosylase catalytic; IMG reference gene:2503007646; PFAM: Transglycosylase SLT domain; LysM domain.
 
  
 0.478
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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