STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_4334KEGG: pfl:PFL_2841 spermine/spermidine synthase family protein; IMG reference gene:2503010082; PFAM: Spermine/spermidine synthase. (1047 aa)    
Predicted Functional Partners:
Dalk_1010
PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: sat:SYN_02837 flagellar motor switch protein; IMG reference gene:2503006711; PFAM: Surface presentation of antigens (SPOA); Flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM.
   
   0.864
Dalk_1417
PFAM: S-adenosylmethionine decarboxylase related; KEGG: dol:Dole_3240 hypothetical protein; IMG reference gene:2503007122; PFAM: S-adenosylmethionine decarboxylase.
  
 
 0.848
Dalk_4333
Spermidine synthase-like protein; KEGG: bbr:BB2737 hypothetical protein; IMG reference gene:2503010081.
 
    
0.837
Dalk_2091
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: dol:Dole_0266 amine oxidase; IMG reference gene:2503007810; PFAM: Flavin containing amine oxidoreductase.
    
 0.745
Dalk_4332
KEGG: dol:Dole_1490 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; IMG reference gene:2503010080; PFAM: domain; FAD binding domain; TIGRFAM: L-aspartate oxidase.
     
 0.720
Dalk_3765
Arginase; TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: mgm:Mmc1_3564 putative agmatinase; IMG reference gene:2503009509; PFAM: Arginase family; TIGRFAM: agmatinase.
  
 
 0.694
Dalk_2837
Adenylosuccinate synthase; Catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; IMG reference gene:2503008561; PFAM: Adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthase.
   
 
  0.693
Dalk_3070
PFAM: Spermine synthase; KEGG: dol:Dole_2430 spermine synthase; IMG reference gene:2503008797; PFAM: Spermine/spermidine synthase.
 
  
  0.629
Dalk_1504
PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: tye:THEYE_A1762 ornithine decarboxylase; IMG reference gene:2503007214; PFAM: Pyridoxal-dependent decarboxylase, pyridoxal binding domain.
  
 0.626
Dalk_4335
PFAM: PfkB domain protein; KEGG: yen:YE2605 putative sugar kinase; IMG reference gene:2503010083; PFAM: pfkB family carbohydrate kinase.
  
  
 0.615
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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