STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_4368TIGRFAM: DNA binding domain protein, excisionase family; KEGG: dde:Dde_0119 excisionase/Xis, DNA-binding; IMG reference gene:2503010116; TIGRFAM: DNA binding domain, excisionase family. (309 aa)    
Predicted Functional Partners:
Dalk_4696
TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: dol:Dole_0683 molybdenum cofactor synthesis domain-containing protein; IMG reference gene:2503010452; PFAM: Probable molybdopterin binding domain; MoeA N-terminal region (domain I and II); MoeA C-terminal region (domain IV); TIGRFAM: molybdenum cofactor synthesis domain.
 
  0.974
Dalk_1501
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dps:DP0330 ABC transporter permease; IMG reference gene:2503007211; PFAM: Binding-protein-dependent transport system inner membrane component.
 
    0.810
Dalk_1500
KEGG: dps:DP0331 hypothetical protein; IMG reference gene:2503007210.
 
     0.803
Dalk_4369
KEGG: pzu:PHZ_c2721 hypothetical protein; IMG reference gene:2503010117.
       0.741
Dalk_4139
KEGG: dol:Dole_3175 molybdopterin-guanine dinucleotide biosynthesis protein A; IMG reference gene:2503009885.
 
 
 0.684
Dalk_2768
PFAM: Aldehyde ferredoxin oxidoreductase; KEGG: pth:PTH_0487 aldehyde:ferredoxin oxidoreductase; IMG reference gene:2503008491; PFAM: Aldehyde ferredoxin oxidoreductase, N-terminal domain; Aldehyde ferredoxin oxidoreductase, domains 2 & 3.
 
     0.660
Dalk_4476
PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; KEGG: pcl:Pcal_0077 aldehyde ferredoxin oxidoreductase; IMG reference gene:2503010227; PFAM: Aldehyde ferredoxin oxidoreductase, N-terminal domain; Aldehyde ferredoxin oxidoreductase, domains 2 & 3.
 
     0.660
Dalk_4367
Hypothetical protein Dalk_4367; IMG reference gene:2503010115.
       0.658
Dalk_0256
PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; KEGG: gur:Gura_2421 aldehyde ferredoxin oxidoreductase; IMG reference gene:2503005952; PFAM: Aldehyde ferredoxin oxidoreductase, N-terminal domain; Aldehyde ferredoxin oxidoreductase, domains 2 & 3.
 
     0.649
Dalk_0704
PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; KEGG: nth:Nther_2055 aldehyde ferredoxin oxidoreductase; IMG reference gene:2503006405; PFAM: Aldehyde ferredoxin oxidoreductase, N-terminal domain; Aldehyde ferredoxin oxidoreductase, domains 2 & 3.
 
     0.629
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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