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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_4429Putative TRAP-type C4-dicarboxylate transport system, DctQ subunit; KEGG: dol:Dole_2002 tripartite ATP-independent periplasmic transporter DctQ; IMG reference gene:2503010180; PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component. (161 aa)    
Predicted Functional Partners:
Dalk_4430
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: dol:Dole_2001 TRAP dicarboxylate transporter, DctM subunit; IMG reference gene:2503010181; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit.
 
     0.939
Dalk_4428
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: dol:Dole_2003 TRAP dicarboxylate transporter-DctP subunit; IMG reference gene:2503010179; PFAM: Bacterial extracellular solute-binding protein, family 7.
 
     0.925
Dalk_2527
KEGG: dde:Dde_0600 hypothetical protein; IMG reference gene:2503008248.
  
     0.568
Dalk_3825
PFAM: CBS domain containing protein; KEGG: dol:Dole_0795 CBS domain-containing protein; IMG reference gene:2503009569; PFAM: CBS domain.
  
     0.547
Dalk_2526
PFAM: protein of unknown function DUF81; KEGG: dde:Dde_0598 hypothetical protein; IMG reference gene:2503008247; PFAM: Sulfite exporter TauE/SafE.
  
     0.504
Dalk_4431
PFAM: protein of unknown function DUF140; KEGG: dvl:Dvul_1816 hypothetical protein; IMG reference gene:2503010182; PFAM: Domain of unknown function DUF140; TIGRFAM: conserved hypothetical integral membrane protein.
       0.489
Dalk_4432
Diguanylate cyclase; KEGG: sat:SYN_01263 ABC-type transport system involved in resistance to organic solvents, ATPase component; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; ABC transporter related; SMART: AAA ATPase; IMG reference gene:2503010183; PFAM: ABC transporter; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
       0.489
Dalk_4433
PFAM: Mammalian cell entry related domain protein; KEGG: dde:Dde_2299 putative ABC transport system substrate-binding protein; IMG reference gene:2503010184; PFAM: mce related protein; TIGRFAM: virulence factor Mce family protein.
       0.474
Dalk_2762
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: sat:SYN_02087 putative cytoplasmic protein; IMG reference gene:2503008485; PFAM: Pyridoxamine 5'-phosphate oxidase.
  
     0.454
Dalk_1085
OhcB2 (protein with transmembrane helices); KEGG: dvu:DVU3143 iron-sulfur cluster-binding protein; IMG reference gene:2503006786.
  
     0.446
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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