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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_4445PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: aba:Acid345_4600 peptidase M20; IMG reference gene:2503010196; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain. (435 aa)    
Predicted Functional Partners:
Dalk_0881
PFAM: sugar isomerase (SIS); KEGG: dol:Dole_3201 glutamine--fructose-6-phosphate transaminase (isomerizing); IMG reference gene:2503006582; PFAM: SIS domain; Glutamine amidotransferases class-II.
   
 0.939
Dalk_0409
Argininosuccinate synthetase; Catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; IMG reference gene:2503006106; PFAM: Arginosuccinate synthase; TIGRFAM: argininosuccinate synthase.
  
 0.805
Dalk_2690
KEGG: dol:Dole_2034 N-acetyl-gamma-glutamyl-phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; IMG reference gene:2503008413; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase, common form.
  
 0.797
Dalk_4446
Mn2+ and Fe2+ transporter of the NRAMP family-like protein; KEGG: dps:DP2260 Mn2+/Fe2+ transporter; IMG reference gene:2503010197; PFAM: Natural resistance-associated macrophage protein.
     
 0.779
Dalk_0215
Dihydropyrimidine dehydrogenase (NADP(+)); PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD dependent oxidoreductase; Fe-S cluster domain protein; KEGG: dol:Dole_2825 electron transport complex, RnfABCDGE type, B subunit; IMG reference gene:2503005911; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Putative Fe-S cluster; 4Fe-4S binding domain.
  
 
 0.772
Dalk_2596
TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Fe-S cluster domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dol:Dole_2511 electron transport complex, RnfABCDGE type, B subunit; IMG reference gene:2503008317; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Putative Fe-S cluster; 4Fe-4S binding domain; TIGRFAM: electron transport complex, RnfABCDGE type, B subunit.
  
 
 0.772
Dalk_4098
PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: mtp:Mthe_0325 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; IMG reference gene:2503009843; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain.
 
  
0.743
Dalk_0668
PFAM: flagellar motor switch protein FliG; KEGG: dvu:DVU0312 flagellar motor switch protein FliG; IMG reference gene:2503006369; PFAM: FliG C-terminal domain; TIGRFAM: flagellar motor switch protein FliG.
   
   0.742
Dalk_0519
Ferredoxin-dependent glutamate synthase; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; ferredoxin-dependent glutamate synthase; KEGG: dol:Dole_2275 ferredoxin-dependent glutamate synthase; IMG reference gene:2503006219; PFAM: 4Fe-4S binding domain; Conserved region in glutamate synthase.
  
 
  0.735
Dalk_0647
PFAM: flagellar protein FlaG protein; KEGG: nth:Nther_2230 flagellar protein FlaG protein; IMG reference gene:2503006348; PFAM: FlaG protein.
    
   0.728
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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