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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_4584Hypothetical protein Dalk_4584; IMG reference gene:2503010340. (117 aa)    
Predicted Functional Partners:
Dalk_4582
Hypothetical protein Dalk_4582; IMG reference gene:2503010338.
       0.773
Dalk_4583
KEGG: mag:amb2718 hypothetical protein; IMG reference gene:2503010339.
       0.773
Dalk_4585
TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; KEGG: pth:PTH_2885 replicative DNA helicase; IMG reference gene:2503010341; PFAM: DnaB-like helicase N terminal domain; DnaB-like helicase C terminal domain; TIGRFAM: replicative DNA helicase.
       0.773
Dalk_4586
KEGG: bwe:BcerKBAB4_5817 hypothetical protein; IMG reference gene:2503010342.
       0.655
Dalk_4587
Hypothetical protein Dalk_4587; IMG reference gene:2503010343.
       0.655
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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