STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_4635PFAM: protein of unknown function DUF214; KEGG: dol:Dole_2451 hypothetical protein; IMG reference gene:2503010391; PFAM: Predicted permease. (294 aa)    
Predicted Functional Partners:
Dalk_4636
KEGG: dol:Dole_2450 cell division ATP-binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; IMG reference gene:2503010392; PFAM: ABC transporter; TIGRFAM: cell division ATP-binding protein FtsE.
 0.999
Dalk_4634
PFAM: Peptidase M23; KEGG: dol:Dole_2452 peptidase M23B; IMG reference gene:2503010390; PFAM: Peptidase family M23.
 
 
 
 0.996
Dalk_3132
TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: dol:Dole_2788 cell division protein FtsW; IMG reference gene:2503008861; PFAM: Cell cycle protein; TIGRFAM: cell division protein FtsW.
 
 
 0.828
Dalk_3127
PFAM: cell division protein FtsA; KEGG: gur:Gura_3969 cell division protein FtsA; IMG reference gene:2503008856; PFAM: Cell division protein FtsA; TIGRFAM: cell division protein FtsA.
  
 0.821
Dalk_4632
PFAM: protein of unknown function DUF610 YibQ; KEGG: dol:Dole_2454 protein of unknown function DUF610 YibQ; IMG reference gene:2503010388; PFAM: Divergent polysaccharide deacetylase.
       0.821
Dalk_3633
TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: dol:Dole_0596 rod shape-determining protein RodA; IMG reference gene:2503009377; PFAM: Cell cycle protein; TIGRFAM: rod shape-determining protein RodA; cell division protein FtsW.
  
 
 0.814
Dalk_4633
KEGG: dol:Dole_2453 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; IMG reference gene:2503010389; PFAM: Peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc).
       0.809
Dalk_3128
PFAM: Polypeptide-transport-associated domain protein FtsQ-type; KEGG: dol:Dole_2784 polypeptide-transport-associated domain-containing protein; IMG reference gene:2503008857; PFAM: Cell division protein FtsQ; POTRA domain, FtsQ-type.
    
 0.808
Dalk_3137
Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: dol:Dole_2793 peptidoglycan glycosyltransferase; IMG reference gene:2503008866; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain.
 
  
 0.801
Dalk_3126
TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ domain protein; KEGG: dol:Dole_2782 cell division protein FtsZ; IMG reference gene:2503008855; PFAM: Tubulin/FtsZ family, GTPase domain; FtsZ family, C-terminal domain; TIGRFAM: cell division protein FtsZ.
  
 
 0.793
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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