STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_4645KEGG: gsu:GSU0647 hypothetical protein; IMG reference gene:2503010401; PFAM: Uncharacterized protein conserved in bacteria (DUF2168). (179 aa)    
Predicted Functional Partners:
Dalk_4646
KEGG: dol:Dole_2306 tRNA (guanine-N1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; IMG reference gene:2503010402; PFAM: tRNA (Guanine-1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase.
 
  
 0.984
Dalk_4648
KEGG: sfu:Sfum_3040 hypothetical protein; IMG reference gene:2503010404.
 
     0.859
Dalk_4647
TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: gbm:Gbem_3429 16S rRNA processing protein RimM; IMG reference gene:2503010403; PFAM: PRC-barrel domain; RimM N-terminal domain; TIGRFAM: 16S rRNA processing protein RimM.
  
    0.833
Dalk_4644
PFAM: ribosomal protein L19; KEGG: sat:SYN_00770 50S ribosomal protein L19; IMG reference gene:2503010400; PFAM: Ribosomal protein L19; TIGRFAM: ribosomal protein L19, bacterial type.
 
  
 0.727
Dalk_4649
PFAM: ribosomal protein S16; KEGG: lme:LEUM_1485 SSU ribosomal protein S16P; IMG reference gene:2503010405; PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16.
       0.630
Dalk_4643
PFAM: ribonuclease HII/HIII; KEGG: gsu:GSU0649 ribonuclease HII; IMG reference gene:2503010399; PFAM: Ribonuclease HII.
     
 0.578
Dalk_4650
KEGG: dol:Dole_2310 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; IMG reference gene:2503010406; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; Signal peptide binding domain; TIGRFAM: signal recognition particle protein.
       0.577
Dalk_4642
PFAM: protein of unknown function UPF0102; KEGG: gme:Gmet_2864 hypothetical protein; IMG reference gene:2503010398; PFAM: Uncharacterised protein family UPF0102; TIGRFAM: TIGR00252 family protein.
       0.556
Dalk_4641
PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sus:Acid_0066 uroporphyrin-III C/tetrapyrrole methyltransferase; IMG reference gene:2503010397; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: probable S-adenosylmethionine-dependent methyltransferase, YraL family.
       0.538
Dalk_4810
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dol:Dole_1501 radical SAM domain-containing protein; IMG reference gene:2503010568; PFAM: Radical SAM superfamily.
 
     0.503
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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