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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_4701PFAM: Thioredoxin domain; KEGG: dol:Dole_0131 thioredoxin domain-containing protein; IMG reference gene:2503010457; PFAM: Thioredoxin. (142 aa)    
Predicted Functional Partners:
Dalk_4702
TIGRFAM: peptide methionine sulfoxide reductase; methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; Methionine sulfoxide reductase B; KEGG: pca:Pcar_2611 peptide methionine sulfoxide reductase; IMG reference gene:2503010458; PFAM: SelR domain; Peptide methionine sulfoxide reductase; TIGRFAM: methionine-S-sulfoxide reductase; methionine-R-sulfoxide reductase.
   
 
 0.968
Dalk_4731
PFAM: Thioredoxin domain; KEGG: dol:Dole_2886 thioredoxin domain-containing protein; IMG reference gene:2503010487; PFAM: Thioredoxin.
  
 
 0.927
Dalk_2637
KEGG: dde:Dde_0645 hypothetical protein; IMG reference gene:2503008359; PFAM: Thioredoxin.
  
 
 0.925
Dalk_4732
TIGRFAM: redox-active disulfide protein 2; KEGG: dol:Dole_2878 redox-active disulfide protein 2; IMG reference gene:2503010488; TIGRFAM: small redox-active disulfide protein 2.
  
 
 0.884
Dalk_4700
PFAM: Class I peptide chain release factor; KEGG: noc:Noc_0430 class I peptide chain release factor; IMG reference gene:2503010456; PFAM: RF-1 domain.
       0.678
Dalk_4128
TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: dol:Dole_0092 iojap-like protein; IMG reference gene:2503009874; PFAM: Domain of unknown function DUF143; TIGRFAM: iojap-like ribosome-associated protein.
  
    0.514
Dalk_4699
Hypothetical protein Dalk_4699; IMG reference gene:2503010455.
       0.495
Dalk_3464
KEGG: LOC100091385; hypothetical protein LOC100091385; IMG reference gene:2503009196; PFAM: Protein of unknown function, DUF255.
 
   
 0.485
Dalk_3608
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dol:Dole_0623 histidine kinase; IMG reference gene:2503009340; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.
 
  
 0.474
Dalk_3868
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: mem:Memar_0358 pyridine nucleotide-disulphide oxidoreductase dimerisation region; IMG reference gene:2503009612; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain.
     
 0.447
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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