STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_4715PFAM: protein of unknown function DUF6 transmembrane; Protein of unknown function DUF250; KEGG: hmo:HM1_1018 integral membrane protein duf6, putative; IMG reference gene:2503010471; PFAM: EamA-like transporter family. (323 aa)    
Predicted Functional Partners:
Dalk_1256
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_2307 amino acid ABC transporter permease; IMG reference gene:2503006959; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family.
 
 
  0.801
Dalk_3161
KEGG: dol:Dole_0478 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; IMG reference gene:2503008890; PFAM: Putative undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase.
    
 0.747
Dalk_0379
PFAM: cobalt transport protein; KEGG: mac:MA4343 cobalt transport family protein; IMG reference gene:2503006076; PFAM: Cobalt transport protein.
  
 
  0.709
Dalk_2005
TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: dol:Dole_2020 cobalt ABC transporter, inner membrane subunit CbiQ; IMG reference gene:2503007722; PFAM: Cobalt transport protein; TIGRFAM: cobalt ABC transporter, permease protein CbiQ.
  
 
  0.709
Dalk_4068
PFAM: cobalt transport protein; KEGG: mma:MM_1995 cobalt transport protein; IMG reference gene:2503009813; PFAM: Cobalt transport protein.
  
 
  0.709
Dalk_2788
Protein of unknown function DUF140; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; protein of unknown function DUF140; KEGG: dol:Dole_1017 hypothetical protein; IMG reference gene:2503008511; PFAM: Domain of unknown function DUF140; STAS domain; TIGRFAM: conserved hypothetical integral membrane protein.
    
  0.694
Dalk_4431
PFAM: protein of unknown function DUF140; KEGG: dvl:Dvul_1816 hypothetical protein; IMG reference gene:2503010182; PFAM: Domain of unknown function DUF140; TIGRFAM: conserved hypothetical integral membrane protein.
    
  0.693
Dalk_1254
PFAM: protein of unknown function DUF6 transmembrane; KEGG: pfl:PFL_1237 hypothetical protein; IMG reference gene:2503006957; PFAM: EamA-like transporter family.
  
     0.670
Dalk_4742
PFAM: ribosomal protein S15; KEGG: gur:Gura_1905 30S ribosomal protein S15; IMG reference gene:2503010499; PFAM: Ribosomal protein S15; TIGRFAM: ribosomal protein S15, bacterial/organelle.
    
 0.634
Dalk_1909
KEGG: dol:Dole_0714 ribosomal protein S3; TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; Ribosomal protein S3 domain; SMART: KH domain protein; IMG reference gene:2503007621; PFAM: KH domain; Ribosomal protein S3, C-terminal domain; Ribosomal protein S3, N-terminal domain; TIGRFAM: ribosomal protein S3, bacterial type.
   
 
  0.627
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.